RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 CAPN9O14815 690 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 LIASO43766 372 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 LPXNO60711 386 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 LYPLA1O75608 230 aaPredicted RBP9.08□□□□□ -0.96
USP40-203ENST00000427112 STAM2O75886 525 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 ICAM1P05362 532 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 MYH9P35579 1960 aaKnown RBP9.08□□□□□ -0.96
USP40-203ENST00000427112 SOX11P35716 441 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 MKRN3Q13064 507 aaKnown RBP9.08□□□□□ -0.96
USP40-203ENST00000427112 EMC10Q5UCC4 262 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.08□□□□□ -0.96
USP40-203ENST00000427112 SESTD1Q86VW0 696 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 KIAA0319LQ8IZA0 1049 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 RNF148Q8N7C7 305 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 NDRG1Q92597 394 aaKnown RBP9.08□□□□□ -0.96
USP40-203ENST00000427112 COPS5Q92905 334 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 L3MBTL3Q96JM7 780 aaPredicted RBP9.08□□□□□ -0.96
USP40-203ENST00000427112 WRNIP1Q96S55 665 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 CYP26B1Q9NR63 512 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 PXMP2Q9NR77 195 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 RAB6BQ9NRW1 208 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 ANKRD12Q6UB98 2062 aa9.08□□□□□ -0.96
USP40-203ENST00000427112 SBF2Q86WG5 1849 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 PDE5AO76074 875 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 T-ENOLP0DO92 83 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 RBP3P10745 1247 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 GHRP10912 638 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 AMPD1P23109 780 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 ATP5DP30049 168 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 LY6KQ17RY6 165 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 RHBDF2Q6PJF5 856 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 CDHR3Q6ZTQ4 885 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 CCDC110Q8TBZ0 833 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 SPATA18Q8TC71 538 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 FAXDC2Q96IV6 333 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 SERAC1Q96JX3 654 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 SLITRK1Q96PX8 696 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 MIPEPQ99797 713 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 THTPAQ9BU02 230 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 MOV10L1Q9BXT6 1211 aaKnown RBP9.07□□□□□ -0.96
USP40-203ENST00000427112 JPH1Q9HDC5 661 aaPredicted RBP9.07□□□□□ -0.96
USP40-203ENST00000427112 CISHQ9NSE2 258 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 TTLL3Q9Y4R7 772 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 KBTBD13C9JR72 458 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 GOLGA8TH3BQL2 631 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 PIK3CDO00329 1044 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 MAPTP10636 758 aaKnown RBP9.07□□□□□ -0.96
USP40-203ENST00000427112 ESRRAP11474 423 aaPredicted RBP9.07□□□□□ -0.96
USP40-203ENST00000427112 CDH6P55285 790 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 EIF3EP60228 445 aaKnown RBP9.07□□□□□ -0.96
USP40-203ENST00000427112 TMPRSS15P98073 1019 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 UBAP2LQ14157 1087 aaKnown RBP9.07□□□□□ -0.96
USP40-203ENST00000427112 OR6B2Q6IFH4 312 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 RINLQ6ZS11 566 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 CENPUQ71F23 418 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 ABRAQ8N0Z2 381 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.07□□□□□ -0.96
USP40-203ENST00000427112 FAF2Q96CS3 445 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 PGBD4Q96DM1 585 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 SENP7Q9BQF6 1050 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 TMEM120AQ9BXJ8 343 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 FIS1Q9Y3D6 152 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 CXorf49A8MYA2 514 aaPredicted RBP9.07□□□□□ -0.96
USP40-203ENST00000427112 TRIM49D1C9J1S8 452 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 TMEM191BP0C7N4 346 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 RPL22P35268 128 aaKnown RBP9.07□□□□□ -0.96
USP40-203ENST00000427112 CLCN3P51790 818 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 ARFIP2P53365 341 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 DRG2P55039 364 aaKnown RBP9.07□□□□□ -0.96
USP40-203ENST00000427112 PTK7Q13308 1070 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 ZC3H12AQ5D1E8 599 aaKnown RBP9.07□□□□□ -0.96
USP40-203ENST00000427112 GLRA4Q5JXX5 417 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 FYB2Q5VWT5 728 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 TLDC1Q6P9B6 456 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 MON1BQ7L1V2 547 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 NCAPG2Q86XI2 1143 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 MAP4K3Q8IVH8 894 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 PNPLA1Q8N8W4 532 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 PRPF31Q8WWY3 499 aaKnown RBP9.07□□□□□ -0.96
USP40-203ENST00000427112 CENPTQ96BT3 561 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.07□□□□□ -0.96
USP40-203ENST00000427112 FEM1BQ9UK73 627 aa9.07□□□□□ -0.96
USP40-203ENST00000427112 B2RBV5 119 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 ATP2A1O14983 1001 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 PEX11AO75192 247 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 RGS20O76081 388 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 ASNSP08243 561 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 INHBAP08476 426 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 KRT3P12035 628 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 GBP1P32455 592 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 RASSF2P50749 326 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 GPC3P51654 580 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 CCDC142Q17RM4 750 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 FAM102AQ5T9C2 384 aaPredicted RBP9.06□□□□□ -0.96
USP40-203ENST00000427112 CCNJLQ8IV13 435 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 CPB2Q96IY4 423 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 HEXIM2Q96MH2 286 aaKnown RBP9.06□□□□□ -0.96
USP40-203ENST00000427112 TSSK1BQ9BXA7 367 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.06□□□□□ -0.96
USP40-203ENST00000427112 CLUHO75153 1309 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms