RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 HCAR2Q8TDS4 363 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 SEPT1Q8WYJ6 367 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PTCHD1Q96NR3 888 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 CCDC3Q9BQI4 270 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 BRINP2Q9C0B6 783 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 CCDC113Q9H0I3 377 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 TRIT1Q9H3H1 467 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 ERRFI1Q9UJM3 462 aaPredicted RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 ERVK-11Q9UQG0 969 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 MAP3K2Q9Y2U5 619 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PCDHGB3Q9Y5G1 929 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 SOWAHDA6NJG2 315 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 CTIFO43310 598 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 KERAO60938 352 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 OFD1O75665 1012 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 C1RP00736 705 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 EDN1P05305 212 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 COL6A1P12109 1028 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 CD52P31358 61 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 ADD2P35612 726 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 CAP2P40123 477 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 HADHAP40939 763 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PTPN9P43378 593 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 GNAQP50148 359 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 TKTL1P51854 596 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 HNRNPKP61978 463 aaKnown RBP eCLIP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 CD69Q07108 199 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 EIF3IQ13347 325 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 NCOA4Q13772 614 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 SQLEQ14534 574 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 SMAD1Q15797 465 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 MLIPQ5VWP3 458 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 OLFML2BQ68BL8 750 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 SLC9A4Q6AI14 798 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 TCEAL6Q6IPX3 200 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 RAB11FIP2Q7L804 512 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 BIVMQ86UB2 503 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 SYNPOQ8N3V7 929 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 OTUD6BQ8N6M0 293 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 Q8N9G6 341 aaPredicted RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 ASB5Q8WWX0 329 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 P2RX5Q93086 422 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 TCEAL3Q969E4 200 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 ARRDC3Q96B67 414 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 SEC62Q99442 399 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PRPF18Q99633 342 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 C17orf62Q9BQA9 187 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 DPH1Q9BZG8 443 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 EBF3Q9H4W6 596 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 CACYBPQ9HB71 228 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 DISC1Q9NRI5 854 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 SETD4Q9NVD3 440 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 SIRPGQ9P1W8 387 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 HCN3Q9P1Z3 774 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 TBC1D14Q9P2M4 693 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 ACAD8Q9UKU7 415 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 ATRNL1Q5VV63 1379 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PXDNLA1KZ92 1463 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PPFIA4O75335 1185 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 HEXIM1O94992 359 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 TRUB2O95900 331 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PARP1P09874 1014 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 FGFR2P21802 821 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 FPR2P25090 351 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 SLC6A4P31645 630 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PTDSS1P48651 473 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PCBP2Q15366 365 aaKnown RBP eCLIP2.92□□□□□ -1.942e-14■■■□□ 15.9
CCDC88A-205ENST00000426576 DCAF4L1Q3SXM0 396 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 CRTC2Q53ET0 693 aaPredicted RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 SLC10A5Q5PT55 438 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 CRTC1Q6UUV9 634 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PI16Q6UXB8 463 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 ALLCQ8N6M5 410 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PJA1Q8NG27 643 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 LINS1Q8NG48 757 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 DNAJB3Q8WWF6 145 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 LPIN2Q92539 896 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 MAML3Q96JK9 1138 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 SERAC1Q96JX3 654 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PORCNQ9H237 461 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 CCDC134Q9H6E4 229 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 POLR1BQ9H9Y6 1135 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PLEKHA5Q9HAU0 1116 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 HPS4Q9NQG7 708 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 GKN1Q9NS71 199 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 COL20A1Q9P218 1284 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 HDAC6Q9UBN7 1215 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 EIF2B4Q9UI10 523 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 HPCAL4Q9UM19 191 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 ARHGEF12Q9NZN5 1544 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 WDFY3Q8IZQ1 3526 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 LOC101059915A0A1B0GWI6 518 aaPredicted RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 ACOT7O00154 380 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 KPNA3O00505 521 aaPredicted RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 DGAT1O75907 488 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PLGP00747 810 aaPredicted RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 IL1BP01584 269 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 KRT15P19012 456 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 CR2P20023 1033 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 TXLNAP40222 546 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms