RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 ITGA8P53708 1063 aa21.21■□□□□ 0.99
USP39-204ENST00000409766 ODF2Q5BJF6 829 aa21.21■□□□□ 0.99
USP39-204ENST00000409766 ALKAL1Q6UXT8 129 aa21.21■□□□□ 0.99
USP39-204ENST00000409766 HOOK3Q86VS8 718 aa21.21■□□□□ 0.99
USP39-204ENST00000409766 CCDC89Q8N998 374 aa21.21■□□□□ 0.99
USP39-204ENST00000409766 UBA3Q8TBC4 463 aa21.21■□□□□ 0.99
USP39-204ENST00000409766 DNAJB3Q8WWF6 145 aa21.21■□□□□ 0.99
USP39-204ENST00000409766 NOVA2Q9UNW9 492 aaKnown RBP21.21■□□□□ 0.99
USP39-204ENST00000409766 LRRD1A4D1F6 860 aa21.2■□□□□ 0.98
USP39-204ENST00000409766 MANSC4A6NHS7 340 aaPredicted RBP21.2■□□□□ 0.98
USP39-204ENST00000409766 C3orf70A6NLC5 250 aaPredicted RBP21.2■□□□□ 0.98
USP39-204ENST00000409766 KLRC2P26717 231 aa21.2■□□□□ 0.98
USP39-204ENST00000409766 HPDP32754 393 aaPredicted RBP21.2■□□□□ 0.98
USP39-204ENST00000409766 CPT1AP50416 773 aa21.2■□□□□ 0.98
USP39-204ENST00000409766 ZNF157P51786 506 aaPredicted RBP21.2■□□□□ 0.98
USP39-204ENST00000409766 YARSP54577 528 aaKnown RBP21.2■□□□□ 0.98
USP39-204ENST00000409766 CAV1Q03135 178 aa21.2■□□□□ 0.98
USP39-204ENST00000409766 FOXR1Q6PIV2 292 aa21.2■□□□□ 0.98
USP39-204ENST00000409766 C17orf99Q6UX52 265 aa21.2■□□□□ 0.98
USP39-204ENST00000409766 ZNF365Q70YC5 407 aa21.2■□□□□ 0.98
USP39-204ENST00000409766 ARFGAP2Q8N6H7 521 aa21.2■□□□□ 0.98
USP39-204ENST00000409766 EMC1Q8N766 993 aa21.2■□□□□ 0.98
USP39-204ENST00000409766 TRAIPQ9BWF2 469 aa21.2■□□□□ 0.98
USP39-204ENST00000409766 PDCD11Q14690 1871 aaKnown RBP21.2■□□□□ 0.98
USP39-204ENST00000409766 DCDC2CA8MYV0 355 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 PPEF2O14830 753 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 CAND2O75155 1236 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 IL1R2P27930 398 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 MDH1P40925 334 aaKnown RBP21.19■□□□□ 0.98
USP39-204ENST00000409766 GUCY1A3Q02108 690 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 LMNB2Q03252 620 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 TRMT10CQ7L0Y3 403 aaKnown RBP21.19■□□□□ 0.98
USP39-204ENST00000409766 DPH6Q7L8W6 267 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 CCDC25Q86WR0 208 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 TMEM40Q8WWA1 233 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 TLCD1Q96CP7 247 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 NXF3Q9H4D5 531 aaKnown RBP21.19■□□□□ 0.98
USP39-204ENST00000409766 CNTN3Q9P232 1028 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 TUBGCP4Q9UGJ1 667 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 TSPAN16Q9UKR8 245 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 DNPEPQ9ULA0 475 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 TREHO43280 583 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 IGHA2P01877 340 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 KRT7P08729 469 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 AXLP30530 894 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 CHKAP35790 457 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 BYSLQ13895 437 aaKnown RBP21.19■□□□□ 0.98
USP39-204ENST00000409766 C12orf29Q8N999 325 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 TMEM109Q9BVC6 243 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 TSPYL1Q9H0U9 437 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 CWC15Q9P013 229 aaKnown RBP21.19■□□□□ 0.98
USP39-204ENST00000409766 SLC12A6Q9UHW9 1150 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 ANAPC5Q9UJX4 755 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 Q9Y3F1 56 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 SNX9Q9Y5X1 595 aa21.19■□□□□ 0.98
USP39-204ENST00000409766 PFKMP08237 780 aa21.18■□□□□ 0.98
USP39-204ENST00000409766 CYP2B6P20813 491 aa21.18■□□□□ 0.98
USP39-204ENST00000409766 VPS41P49754 854 aa21.18■□□□□ 0.98
USP39-204ENST00000409766 MAGOHP61326 146 aaKnown RBP21.18■□□□□ 0.98
USP39-204ENST00000409766 SNX17Q15036 470 aa21.18■□□□□ 0.98
USP39-204ENST00000409766 HADHQ16836 314 aaKnown RBP21.18■□□□□ 0.98
USP39-204ENST00000409766 CHADLQ6NUI6 762 aa21.18■□□□□ 0.98
USP39-204ENST00000409766 LRRC52Q8N7C0 313 aa21.18■□□□□ 0.98
USP39-204ENST00000409766 BEST2Q8NFU1 509 aa21.18■□□□□ 0.98
USP39-204ENST00000409766 C18orf25Q96B23 403 aaPredicted RBP21.18■□□□□ 0.98
USP39-204ENST00000409766 PGM2Q96G03 612 aa21.18■□□□□ 0.98
USP39-204ENST00000409766 MRPL45Q9BRJ2 306 aaKnown RBP21.18■□□□□ 0.98
USP39-204ENST00000409766 EFR3BQ9Y2G0 817 aa21.18■□□□□ 0.98
USP39-204ENST00000409766 RECQL4O94761 1208 aa21.17■□□□□ 0.98
USP39-204ENST00000409766 ZNF200P98182 395 aaPredicted RBP21.17■□□□□ 0.98
USP39-204ENST00000409766 BEX3Q00994 111 aa21.17■□□□□ 0.98
USP39-204ENST00000409766 ACAP1Q15027 740 aa21.17■□□□□ 0.98
USP39-204ENST00000409766 STILQ15468 1287 aa21.17■□□□□ 0.98
USP39-204ENST00000409766 SMTNL2Q2TAL5 461 aa21.17■□□□□ 0.98
USP39-204ENST00000409766 GSTA5Q7RTV2 222 aa21.17■□□□□ 0.98
USP39-204ENST00000409766 BBOF1Q8ND07 529 aa21.17■□□□□ 0.98
USP39-204ENST00000409766 TRIM6Q9C030 488 aaPredicted RBP21.17■□□□□ 0.98
USP39-204ENST00000409766 CDC42EP4Q9H3Q1 356 aaKnown RBP21.17■□□□□ 0.98
USP39-204ENST00000409766 ZWILCHQ9H900 591 aa21.17■□□□□ 0.98
USP39-204ENST00000409766 GJD2Q9UKL4 321 aa21.17■□□□□ 0.98
USP39-204ENST00000409766 DRG1Q9Y295 367 aaKnown RBP21.17■□□□□ 0.98
USP39-204ENST00000409766 MYL3P08590 195 aa21.17■□□□□ 0.98
USP39-204ENST00000409766 LSP1P33241 339 aa21.17■□□□□ 0.98
USP39-204ENST00000409766 RGS2P41220 211 aa21.17■□□□□ 0.98
USP39-204ENST00000409766 PPP2R2AP63151 447 aa21.17■□□□□ 0.98
USP39-204ENST00000409766 TAZQ16635 292 aa21.17■□□□□ 0.98
USP39-204ENST00000409766 KCNT1Q5JUK3 1230 aa21.17■□□□□ 0.98
USP39-204ENST00000409766 GLRA4Q5JXX5 417 aa21.17■□□□□ 0.98
USP39-204ENST00000409766 FAM102AQ5T9C2 384 aaPredicted RBP21.17■□□□□ 0.98
USP39-204ENST00000409766 IPO4Q8TEX9 1081 aaKnown RBP21.17■□□□□ 0.98
USP39-204ENST00000409766 AP5M1Q9H0R1 490 aa21.17■□□□□ 0.98
USP39-204ENST00000409766 NME7Q9Y5B8 376 aa21.17■□□□□ 0.98
USP39-204ENST00000409766 OASLQ15646 514 aaKnown RBP21.16■□□□□ 0.98
USP39-204ENST00000409766 SKIDA1Q1XH10 827 aa21.16■□□□□ 0.98
USP39-204ENST00000409766 PPP1R26Q5T8A7 1209 aaPredicted RBP21.16■□□□□ 0.98
USP39-204ENST00000409766 C9orf57Q5W0N0 161 aa21.16■□□□□ 0.98
USP39-204ENST00000409766 CROCCP2Q86T23 111 aa21.16■□□□□ 0.98
USP39-204ENST00000409766 PRUNE1Q86TP1 453 aa21.16■□□□□ 0.98
USP39-204ENST00000409766 ALLCQ8N6M5 410 aa21.16■□□□□ 0.98
USP39-204ENST00000409766 BCAS4Q8TDM0 211 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms