RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 UBA6A0AVT1 1052 aaPredicted RBP5.9□□□□□ -1.47
CLK1-202ENST00000409403 ANO9A1A5B4 782 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 HMGB1P1B2RPK0 211 aaPredicted RBP5.9□□□□□ -1.47
CLK1-202ENST00000409403 CHL1O00533 1208 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 TSPAN6O43657 245 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 ZNF202O95125 648 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 UBTFL1P0CB47 393 aaPredicted RBP5.9□□□□□ -1.47
CLK1-202ENST00000409403 CCND1P24385 295 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 KIF5BP33176 963 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 ABCD1P33897 745 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 PEX19P40855 299 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 STAT5AP42229 794 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 CRKLP46109 303 aaKnown RBP5.9□□□□□ -1.47
CLK1-202ENST00000409403 NKX3-2P78367 333 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 MTX1Q13505 466 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 LAMB3Q13751 1172 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 PTGISQ16647 500 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 SKIDA1Q1XH10 827 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 ADCK5Q3MIX3 580 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 SLC9C1Q4G0N8 1177 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 GLE1Q53GS7 698 aaKnown RBP5.9□□□□□ -1.47
CLK1-202ENST00000409403 MIS18BP1Q6P0N0 1132 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 PGM2L1Q6PCE3 622 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 CCNI2Q6ZMN8 369 aaPredicted RBP5.9□□□□□ -1.47
CLK1-202ENST00000409403 BZW1Q7L1Q6 419 aaKnown RBP5.9□□□□□ -1.47
CLK1-202ENST00000409403 TRAPPC11Q7Z392 1133 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 CACNA2D4Q7Z3S7 1137 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 ARHGAP22Q7Z5H3 698 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 UBE2Q1Q7Z7E8 422 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 RTN4RL1Q86UN2 441 aaPredicted RBP5.9□□□□□ -1.47
CLK1-202ENST00000409403 ZC3H18Q86VM9 953 aaKnown RBP5.9□□□□□ -1.47
CLK1-202ENST00000409403 NLRP14Q86W24 1093 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 CILP2Q8IUL8 1156 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 TDHQ8IZJ6 230 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 SLC35F6Q8N357 371 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 TRIML1Q8N9V2 468 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 MLKLQ8NB16 471 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 CAGE1Q8TC20 777 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 AENQ8WTP8 325 aaKnown RBP5.9□□□□□ -1.47
CLK1-202ENST00000409403 LZICQ8WZA0 190 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 ZBTB10Q96DT7 871 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 BICD1Q96G01 975 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 UHRF1Q96T88 793 aaPredicted RBP5.9□□□□□ -1.47
CLK1-202ENST00000409403 MMTAG2Q9BU76 263 aaKnown RBP5.9□□□□□ -1.47
CLK1-202ENST00000409403 CDH19Q9H159 772 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 ZNF552Q9H707 407 aaPredicted RBP5.9□□□□□ -1.47
CLK1-202ENST00000409403 MRPL44Q9H9J2 332 aaKnown RBP5.9□□□□□ -1.47
CLK1-202ENST00000409403 INCENPQ9NQS7 918 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 TMOD3Q9NYL9 352 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 RIPOR2Q9Y4F9 1068 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 SNED1Q8TER0 1413 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 MAP3K19Q56UN5 1328 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 ITIH6Q6UXX5 1313 aa5.9□□□□□ -1.47
CLK1-202ENST00000409403 CFAP54Q96N23 3096 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 CACNA1FO60840 1977 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 PRAMEF22A3QJZ6 481 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 TRIM75PA6NK02 468 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 AGPSO00116 658 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 PSMD14O00487 310 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 FYB1O15117 783 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 SPTLC2O15270 562 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 ATP6V1G2O95670 118 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 SCGB1D2O95969 90 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 ASGR2P07307 311 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 VIMP08670 466 aaKnown RBP5.89□□□□□ -1.47
CLK1-202ENST00000409403 RBP3P10745 1247 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 ATP1A3P13637 1013 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 CPA1P15085 419 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 VIPR1P32241 457 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 CD151P48509 253 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 NDUFA8P51970 172 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 CUL3Q13618 768 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 TOB2Q14106 344 aaPredicted RBP5.89□□□□□ -1.47
CLK1-202ENST00000409403 KCNB1Q14721 858 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 KRT24Q2M2I5 525 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 CR1LQ2VPA4 569 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 ANKRD20A8PQ5CZ79 823 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 TTC38Q5R3I4 469 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 PRAMEF18Q5VWM3 479 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 TIGD7Q6NT04 549 aaPredicted RBP5.89□□□□□ -1.47
CLK1-202ENST00000409403 SLC4A10Q6U841 1118 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 C6orf89Q6UWU4 347 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 CYP26C1Q6V0L0 522 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 ESPNLQ6ZVH7 1005 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 ZNF605Q86T29 641 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 CXorf67Q86X51 503 aaPredicted RBP5.89□□□□□ -1.47
CLK1-202ENST00000409403 CD302Q8IX05 232 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 CACNA2D3Q8IZS8 1091 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 CLASRPQ8N2M8 674 aaKnown RBP5.89□□□□□ -1.47
CLK1-202ENST00000409403 GBP7Q8N8V2 638 aaPredicted RBP5.89□□□□□ -1.47
CLK1-202ENST00000409403 MYCBPAPQ8TBZ2 947 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 CPA5Q8WXQ8 436 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.89□□□□□ -1.476e-7■■■■■ 27.3
CLK1-202ENST00000409403 CAVIN3Q969G5 261 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 THOC1Q96FV9 657 aaKnown RBP5.89□□□□□ -1.47
CLK1-202ENST00000409403 TUBGCP5Q96RT8 1024 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 USP28Q96RU2 1077 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 IL25Q9H293 177 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 POFUT1Q9H488 388 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 HAUS4Q9H6D7 363 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms