RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 CLEC1BQ9P126 229 aa31.2■■■□□ 2.59
USP42-202ENST00000404008 SLC27A5Q9Y2P5 690 aa31.2■■■□□ 2.59
USP42-202ENST00000404008 PAEPP09466 180 aa31.19■■■□□ 2.58
USP42-202ENST00000404008 PLCB2Q00722 1185 aa31.19■■■□□ 2.58
USP42-202ENST00000404008 DLX2Q07687 328 aaPredicted RBP31.19■■■□□ 2.58
USP42-202ENST00000404008 DRAP1Q14919 205 aaPredicted RBP31.19■■■□□ 2.58
USP42-202ENST00000404008 UVSSAQ2YD98 709 aa31.19■■■□□ 2.58
USP42-202ENST00000404008 RTL10Q7L3V2 364 aa31.19■■■□□ 2.58
USP42-202ENST00000404008 FAM49BQ9NUQ9 324 aa31.19■■■□□ 2.58
USP42-202ENST00000404008 FOXN3O00409 490 aaPredicted RBP31.18■■■□□ 2.58
USP42-202ENST00000404008 CCDC130P13994 396 aa31.18■■■□□ 2.58
USP42-202ENST00000404008 SKIV2LQ15477 1246 aaKnown RBP31.18■■■□□ 2.58
USP42-202ENST00000404008 ANKRD54Q6NXT1 300 aa31.18■■■□□ 2.58
USP42-202ENST00000404008 FUKQ8N0W3 1084 aa31.18■■■□□ 2.58
USP42-202ENST00000404008 RHOBTB2Q9BYZ6 727 aa31.18■■■□□ 2.58
USP42-202ENST00000404008 NLRC4Q9NPP4 1024 aa31.18■■■□□ 2.58
USP42-202ENST00000404008 INSL5Q9Y5Q6 135 aa31.18■■■□□ 2.58
USP42-202ENST00000404008 F8VZ95 297 aa31.17■■■□□ 2.58
USP42-202ENST00000404008 ZMYND10O75800 440 aa31.17■■■□□ 2.58
USP42-202ENST00000404008 CYP2F1P24903 491 aa31.17■■■□□ 2.58
USP42-202ENST00000404008 JAM2P57087 298 aa31.17■■■□□ 2.58
USP42-202ENST00000404008 EP400NLQ6ZTU2 488 aa31.17■■■□□ 2.58
USP42-202ENST00000404008 PAQR9Q6ZVX9 377 aa31.17■■■□□ 2.58
USP42-202ENST00000404008 SLC2A14Q8TDB8 520 aa31.17■■■□□ 2.58
USP42-202ENST00000404008 CYFIP2Q96F07 1278 aa31.17■■■□□ 2.58
USP42-202ENST00000404008 SFXN1Q9H9B4 322 aa31.17■■■□□ 2.58
USP42-202ENST00000404008 CEP72Q9P209 647 aa31.17■■■□□ 2.58
USP42-202ENST00000404008 KIAA1257Q9ULG3 409 aa31.17■■■□□ 2.58
USP42-202ENST00000404008 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP31.17■■■□□ 2.58
USP42-202ENST00000404008 CLDN5O00501 218 aa31.17■■■□□ 2.58
USP42-202ENST00000404008 RFPL2O75678 378 aa31.17■■■□□ 2.58
USP42-202ENST00000404008 PNMA6AP0CW24 399 aaPredicted RBP31.17■■■□□ 2.58
USP42-202ENST00000404008 HAPLN1P10915 354 aaPredicted RBP31.17■■■□□ 2.58
USP42-202ENST00000404008 USP8P40818 1118 aa31.17■■■□□ 2.58
USP42-202ENST00000404008 PPM1LQ5SGD2 360 aa31.17■■■□□ 2.58
USP42-202ENST00000404008 FAM71AQ8IYT1 594 aa31.17■■■□□ 2.58
USP42-202ENST00000404008 SEPT5Q99719 369 aaPredicted RBP31.17■■■□□ 2.58
USP42-202ENST00000404008 ZNF518BQ9C0D4 1074 aa31.17■■■□□ 2.58
USP42-202ENST00000404008 ZDHHC7Q9NXF8 308 aa31.17■■■□□ 2.58
USP42-202ENST00000404008 YIPF1Q9Y548 306 aa31.17■■■□□ 2.58
USP42-202ENST00000404008 MYH10P35580 1976 aa31.16■■■□□ 2.58
USP42-202ENST00000404008 BRWD1Q9NSI6 2320 aa31.16■■■□□ 2.58
USP42-202ENST00000404008 SPDYE4A6NLX3 237 aa31.16■■■□□ 2.58
USP42-202ENST00000404008 PAPLNO95428 1278 aa31.16■■■□□ 2.58
USP42-202ENST00000404008 HOXB8P17481 243 aaPredicted RBP31.16■■■□□ 2.58
USP42-202ENST00000404008 BDNFP23560 247 aa31.16■■■□□ 2.58
USP42-202ENST00000404008 HOXA9P31269 272 aa31.16■■■□□ 2.58
USP42-202ENST00000404008 MAGEA11P43364 429 aa31.16■■■□□ 2.58
USP42-202ENST00000404008 TUFMP49411 452 aaKnown RBP31.16■■■□□ 2.58
USP42-202ENST00000404008 MGAT5BQ3V5L5 792 aa31.16■■■□□ 2.58
USP42-202ENST00000404008 PPP1R26Q5T8A7 1209 aaPredicted RBP31.16■■■□□ 2.58
USP42-202ENST00000404008 FAM35AQ86V20 835 aa31.16■■■□□ 2.58
USP42-202ENST00000404008 MSLNLQ96KJ4 702 aa31.16■■■□□ 2.58
USP42-202ENST00000404008 HNRNPABQ99729 332 aaKnown RBP31.16■■■□□ 2.58
USP42-202ENST00000404008 MED10Q9BTT4 135 aa31.16■■■□□ 2.58
USP42-202ENST00000404008 TRIM5Q9C035 493 aa31.16■■■□□ 2.58
USP42-202ENST00000404008 TTYH3Q9C0H2 523 aa31.16■■■□□ 2.58
USP42-202ENST00000404008 UBE2ZQ9H832 354 aaPredicted RBP31.16■■■□□ 2.58
USP42-202ENST00000404008 C2orf16Q68DN1 1984 aa31.15■■■□□ 2.58
USP42-202ENST00000404008 ATP8B3O60423 1300 aa31.15■■■□□ 2.58
USP42-202ENST00000404008 SOAT2O75908 522 aa31.15■■■□□ 2.58
USP42-202ENST00000404008 VDRP11473 427 aa31.15■■■□□ 2.58
USP42-202ENST00000404008 CD19P15391 556 aa31.15■■■□□ 2.58
USP42-202ENST00000404008 SGO2Q562F6 1265 aa31.15■■■□□ 2.58
USP42-202ENST00000404008 FIGNQ5HY92 759 aa31.15■■■□□ 2.58
USP42-202ENST00000404008 ARHGAP17Q68EM7 881 aa31.15■■■□□ 2.58
USP42-202ENST00000404008 SYCE2Q6PIF2 218 aa31.15■■■□□ 2.58
USP42-202ENST00000404008 VSTM1Q6UX27 236 aa31.15■■■□□ 2.58
USP42-202ENST00000404008 C12orf76Q8N812 135 aaPredicted RBP31.15■■■□□ 2.58
USP42-202ENST00000404008 CMASQ8NFW8 434 aaPredicted RBP31.15■■■□□ 2.58
USP42-202ENST00000404008 PATJQ8NI35 1801 aa31.14■■■□□ 2.58
USP42-202ENST00000404008 ITIH6Q6UXX5 1313 aa31.14■■■□□ 2.58
USP42-202ENST00000404008 CYP26A1O43174 497 aa31.14■■■□□ 2.58
USP42-202ENST00000404008 CALCAP01258 141 aa31.14■■■□□ 2.58
USP42-202ENST00000404008 HNRNPA1P09651 372 aaKnown RBP eCLIP31.14■■■□□ 2.58
USP42-202ENST00000404008 CACNA2D4Q7Z3S7 1137 aa31.14■■■□□ 2.58
USP42-202ENST00000404008 TFAP2BQ92481 460 aa31.14■■■□□ 2.58
USP42-202ENST00000404008 HLA-CQ95604 372 aa31.14■■■□□ 2.58
USP42-202ENST00000404008 SMARCD1Q96GM5 515 aa31.14■■■□□ 2.58
USP42-202ENST00000404008 SPAG5Q96R06 1193 aa31.14■■■□□ 2.58
USP42-202ENST00000404008 ADORA2BP29275 332 aa31.13■■■□□ 2.57
USP42-202ENST00000404008 CLCN1P35523 988 aa31.13■■■□□ 2.57
USP42-202ENST00000404008 CACNA2D1P54289 1103 aa31.13■■■□□ 2.57
USP42-202ENST00000404008 TWF1Q12792 350 aa31.13■■■□□ 2.57
USP42-202ENST00000404008 NUP58Q9BVL2 599 aa31.13■■■□□ 2.57
USP42-202ENST00000404008 ACP6Q9NPH0 428 aa31.13■■■□□ 2.57
USP42-202ENST00000404008 KRT82Q9NSB4 513 aa31.13■■■□□ 2.57
USP42-202ENST00000404008 TMEM30AQ9NV96 361 aa31.13■■■□□ 2.57
USP42-202ENST00000404008 GREB1Q4ZG55 1949 aa31.12■■■□□ 2.57
USP42-202ENST00000404008 CCDC195A0A1B0GUA6 201 aa31.12■■■□□ 2.57
USP42-202ENST00000404008 LRG1P02750 347 aa31.12■■■□□ 2.57
USP42-202ENST00000404008 ATF6P18850 670 aa31.12■■■□□ 2.57
USP42-202ENST00000404008 ALDH1A3P47895 512 aa31.12■■■□□ 2.57
USP42-202ENST00000404008 PLD1Q13393 1074 aa31.12■■■□□ 2.57
USP42-202ENST00000404008 RARS2Q5T160 578 aaKnown RBP31.12■■■□□ 2.57
USP42-202ENST00000404008 VSTM4Q8IW00 320 aa31.12■■■□□ 2.57
USP42-202ENST00000404008 BAP1Q92560 729 aa31.12■■■□□ 2.57
USP42-202ENST00000404008 ZNF707Q96C28 371 aaPredicted RBP31.12■■■□□ 2.57
USP42-202ENST00000404008 ZSWIM1Q9BR11 485 aa31.12■■■□□ 2.57
USP42-202ENST00000404008 PRKD2Q9BZL6 878 aa31.12■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms