RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 DCAKDQ8WVC6 231 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 CPT1BQ92523 772 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 ELMO3Q96BJ8 720 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 PTCD3Q96EY7 689 aaKnown RBP10.49□□□□□ -0.73
COL17A1-203ENST00000393211 ZBED3Q96IU2 234 aaPredicted RBP10.49□□□□□ -0.73
COL17A1-203ENST00000393211 NSL1Q96IY1 281 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 MCEEQ96PE7 176 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 TMEM121Q9BTD3 319 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 MSTO1Q9BUK6 570 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 FRMD8Q9BZ67 464 aaPredicted RBP10.49□□□□□ -0.73
COL17A1-203ENST00000393211 TMEM39BQ9GZU3 492 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 DENND2DQ9H6A0 471 aaPredicted RBP10.49□□□□□ -0.73
COL17A1-203ENST00000393211 DHX33Q9H6R0 707 aaKnown RBP10.49□□□□□ -0.73
COL17A1-203ENST00000393211 WDR35Q9P2L0 1181 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 PTPRJQ12913 1337 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 ZNF541Q9H0D2 1346 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 SIGLEC16A6NMB1 481 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 F8VP50 259 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 HGSO14964 777 aaPredicted RBP10.48□□□□□ -0.73
COL17A1-203ENST00000393211 CBX6O95503 412 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 MT-ND3P03897 115 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 SUPT20HL2P0C7V6 817 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 GM2AP17900 193 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 ADRA1DP25100 572 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 ARL2P36404 184 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 VHLP40337 213 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 RFC5P40937 340 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 ABL2P42684 1182 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 PTDSS1P48651 473 aaKnown RBP10.48□□□□□ -0.73
COL17A1-203ENST00000393211 ARFIP2P53365 341 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 SOX10P56693 466 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 WNT7BP56706 349 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 ACTR2P61160 394 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 CDK16Q00536 496 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 OCRLQ01968 901 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 TFDP1Q14186 410 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 GNPTABQ3T906 1256 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 SUPT20HL1Q3ZLR7 823 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 LMBRD2Q68DH5 695 aaPredicted RBP10.48□□□□□ -0.73
COL17A1-203ENST00000393211 ZNF449Q6P9G9 518 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 ZPBP2Q6X784 338 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 MTDHQ86UE4 582 aaKnown RBP10.48□□□□□ -0.73
COL17A1-203ENST00000393211 BRSK2Q8IWQ3 736 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 RTKN2Q8IZC4 609 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.48□□□□□ -0.73
COL17A1-203ENST00000393211 TCP10LQ8TDR4 215 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 RSAD2Q8WXG1 361 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 DNAJC9Q8WXX5 260 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 TSSK1BQ9BXA7 367 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 OSBPL1AQ9BXW6 950 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 LHX5Q9H2C1 402 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 PNPLA8Q9NP80 782 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 NPHS2Q9NP85 383 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 HOMER2Q9NSB8 354 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 KLHL11Q9NVR0 708 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.48□□□□□ -0.73
COL17A1-203ENST00000393211 AGTPBP1Q9UPW5 1226 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 PPME1Q9Y570 386 aa10.48□□□□□ -0.73
COL17A1-203ENST00000393211 A8MXQ7 604 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 SPATA31C2B4DYI2 1134 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 VWA5AO00534 786 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 GSC2O15499 205 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 MED7O43513 233 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 ATG7O95352 703 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 NPTXRO95502 500 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 IFNB1P01574 187 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 FGFR1P11362 822 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 TCF4P15884 667 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 STIP1P31948 543 aaKnown RBP10.47□□□□□ -0.73
COL17A1-203ENST00000393211 RPL22P35268 128 aaKnown RBP10.47□□□□□ -0.73
COL17A1-203ENST00000393211 PCK1P35558 622 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 NEK3P51956 506 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 TGFB2P61812 414 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 OTUD4Q01804 1114 aaKnown RBP10.47□□□□□ -0.73
COL17A1-203ENST00000393211 OGDHQ02218 1023 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 SLC25A11Q02978 314 aaKnown RBP10.47□□□□□ -0.73
COL17A1-203ENST00000393211 BAATQ14032 418 aaPredicted RBP10.47□□□□□ -0.73
COL17A1-203ENST00000393211 ANO7Q6IWH7 933 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 IRGCQ6NXR0 463 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 TRMT1LQ7Z2T5 733 aaKnown RBP10.47□□□□□ -0.73
COL17A1-203ENST00000393211 RHPN2Q8IUC4 686 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 CCDC60Q8IWA6 550 aaPredicted RBP10.47□□□□□ -0.73
COL17A1-203ENST00000393211 KIRREL3Q8IZU9 778 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 FBXO36Q8NEA4 188 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 ACTL9Q8TC94 416 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 KCNV2Q8TDN2 545 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 SKA1Q96BD8 255 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 APOPT1Q96IL0 206 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 CADM1Q9BY67 442 aaKnown RBP10.47□□□□□ -0.73
COL17A1-203ENST00000393211 NIFKQ9BYG3 293 aaKnown RBP10.47□□□□□ -0.73
COL17A1-203ENST00000393211 NIF3L1Q9GZT8 377 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 HAPLN2Q9GZV7 340 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 RNF146Q9NTX7 359 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 MAFBQ9Y5Q3 323 aaPredicted RBP10.47□□□□□ -0.73
COL17A1-203ENST00000393211 SSC5DA1L4H1 1573 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 KIAA1217Q5T5P2 1943 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 PARP14Q460N5 1801 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 APOC4-APOC2K7ER74 178 aa10.47□□□□□ -0.73
COL17A1-203ENST00000393211 NVLO15381 856 aaKnown RBP10.47□□□□□ -0.73
COL17A1-203ENST00000393211 LPXNO60711 386 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms