RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 DNAJB3Q8WWF6 145 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 CCDC124Q96CT7 223 aaKnown RBP13.79□□□□□ -0.2
NPHP4-203ENST00000378169 L3MBTL3Q96JM7 780 aaPredicted RBP13.79□□□□□ -0.2
NPHP4-203ENST00000378169 ROPN1BQ9BZX4 212 aaPredicted RBP13.79□□□□□ -0.2
NPHP4-203ENST00000378169 ROPN1Q9HAT0 212 aaPredicted RBP13.79□□□□□ -0.2
NPHP4-203ENST00000378169 SMG5Q9UPR3 1016 aaKnown RBP13.79□□□□□ -0.2
NPHP4-203ENST00000378169 ARL2BPQ9Y2Y0 163 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 USP15Q9Y4E8 981 aaPredicted RBP13.79□□□□□ -0.2
NPHP4-203ENST00000378169 CCNE2O96020 404 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 CPT1AP50416 773 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 EFHC1Q5JVL4 640 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 HYIQ5T013 277 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 LVRNQ6Q4G3 990 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 SGSM3Q96HU1 749 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 CHST7Q9NS84 486 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 USP18Q9UMW8 372 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 UBA6A0AVT1 1052 aaPredicted RBP13.78□□□□□ -0.2
NPHP4-203ENST00000378169 EIF4E1BA6NMX2 242 aaKnown RBP13.78□□□□□ -0.2
NPHP4-203ENST00000378169 KRT4P19013 534 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 RPL21P46778 160 aaKnown RBP13.78□□□□□ -0.2
NPHP4-203ENST00000378169 PCSK7Q16549 785 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 SPOCD1Q6ZMY3 1216 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 EXD1Q8NHP7 514 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 MYCBPAPQ8TBZ2 947 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 SHISA4Q96DD7 197 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 ERP27Q96DN0 273 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 COL20A1Q9P218 1284 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 TSPAN16Q9UKR8 245 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 TOPAZ1Q8N9V7 1692 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 C17orf102A2RUQ5 167 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 C3orf70A6NLC5 250 aaPredicted RBP13.78□□□□□ -0.2
NPHP4-203ENST00000378169 F8VP50 259 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 SPECC1L-ADORA2AF8WAN1 911 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 AP1G2O75843 785 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 ACAT1P24752 427 aaKnown RBP13.78□□□□□ -0.2
NPHP4-203ENST00000378169 HNRNPH3P31942 346 aaKnown RBP13.78□□□□□ -0.2
NPHP4-203ENST00000378169 GRIK4Q16099 956 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 LRRC34Q8IZ02 419 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 CEP120Q8N960 986 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 OR5B17Q8NGF7 314 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.78□□□□□ -0.29e-7■■■■■ 58.1
NPHP4-203ENST00000378169 GBP5Q96PP8 586 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 ABI2Q9NYB9 513 aaPredicted RBP13.78□□□□□ -0.2
NPHP4-203ENST00000378169 KPNA7A9QM74 516 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 NOL3O60936 208 aaKnown RBP13.78□□□□□ -0.2
NPHP4-203ENST00000378169 PPFIA2O75334 1257 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 HOXD10P28358 340 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 KDSRQ06136 332 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 NSUN2Q08J23 767 aaKnown RBP eCLIP13.78□□□□□ -0.2
NPHP4-203ENST00000378169 NDUFAF2Q8N183 169 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 KIF2BQ8N4N8 673 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 RMDN1Q96DB5 314 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 TUBB6Q9BUF5 446 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 SLC38A7Q9NVC3 462 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 HES2Q9Y543 173 aa13.78□□□□□ -0.2
NPHP4-203ENST00000378169 COL1A1P02452 1464 aaPredicted RBP13.77□□□□□ -0.2
NPHP4-203ENST00000378169 LACTBL1A8MY62 500 aa13.77□□□□□ -0.2
NPHP4-203ENST00000378169 CHUKO15111 745 aa13.77□□□□□ -0.2
NPHP4-203ENST00000378169 TRAPPC3O43617 180 aa13.77□□□□□ -0.2
NPHP4-203ENST00000378169 S100BP04271 92 aaPredicted RBP13.77□□□□□ -0.2
NPHP4-203ENST00000378169 ACADSBP45954 432 aa13.77□□□□□ -0.2
NPHP4-203ENST00000378169 PAPOLAP51003 745 aaKnown RBP13.77□□□□□ -0.2
NPHP4-203ENST00000378169 C1QBPQ07021 282 aaKnown RBP13.77□□□□□ -0.2
NPHP4-203ENST00000378169 LRGUKQ96M69 825 aa13.77□□□□□ -0.2
NPHP4-203ENST00000378169 FOXP3Q9BZS1 431 aa13.77□□□□□ -0.2
NPHP4-203ENST00000378169 FHDC1Q9C0D6 1143 aaPredicted RBP13.77□□□□□ -0.2
NPHP4-203ENST00000378169 C10orf88Q9H8K7 445 aa13.77□□□□□ -0.2
NPHP4-203ENST00000378169 TMBIM4Q9HC24 238 aa13.77□□□□□ -0.2
NPHP4-203ENST00000378169 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.77□□□□□ -0.2
NPHP4-203ENST00000378169 TJP2Q9UDY2 1190 aa13.77□□□□□ -0.2
NPHP4-203ENST00000378169 IGKV6D-41A0A0C4DH26 115 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 GOLGA8CPA6NN73 597 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 ZBBXA8MT70 800 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 STIP1P31948 543 aaKnown RBP13.77□□□□□ -0.21
NPHP4-203ENST00000378169 TNFSF9P41273 254 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 ZNF235Q14590 738 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 DCAF4L1Q3SXM0 396 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 CAVIN3Q969G5 261 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 ALKBH8Q96BT7 664 aaKnown RBP13.77□□□□□ -0.21
NPHP4-203ENST00000378169 FAM161BQ96MY7 647 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 CNPY3Q9BT09 278 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 TSSK1BQ9BXA7 367 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 ZNF518BQ9C0D4 1074 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 CHD2O14647 1828 aaKnown RBP13.77□□□□□ -0.21
NPHP4-203ENST00000378169 TRIM49D1C9J1S8 452 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 CYB561D2O14569 222 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 CCNG2Q16589 344 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 GRAMD1BQ3KR37 738 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 ATP13A4Q4VNC1 1196 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 KDM7AQ6ZMT4 941 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 SCUBE3Q8IX30 993 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 FBXO36Q8NEA4 188 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 SEPT5Q99719 369 aaPredicted RBP13.77□□□□□ -0.21
NPHP4-203ENST00000378169 SAE1Q9UBE0 346 aaPredicted RBP13.77□□□□□ -0.21
NPHP4-203ENST00000378169 PCDHA3Q9Y5H8 950 aa13.77□□□□□ -0.21
NPHP4-203ENST00000378169 GOLGA4Q13439 2230 aaKnown RBP13.77□□□□□ -0.21
NPHP4-203ENST00000378169 OVGP1Q12889 678 aa13.76□□□□□ -0.21
NPHP4-203ENST00000378169 MGAT5BQ3V5L5 792 aa13.76□□□□□ -0.21
NPHP4-203ENST00000378169 FBXO47Q5MNV8 452 aa13.76□□□□□ -0.21
NPHP4-203ENST00000378169 IPMKQ8NFU5 416 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms