RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 TMEM51Q9NW97 253 aa11.4□□□□□ -0.58
CLIP1-203ENST00000361654 AAR2Q9Y312 384 aaKnown RBP11.4□□□□□ -0.58
CLIP1-203ENST00000361654 IQSEC2Q5JU85 1478 aa11.4□□□□□ -0.59
CLIP1-203ENST00000361654 NPHP3-ACAD11A0A0J9YXS1 232 aa11.4□□□□□ -0.59
CLIP1-203ENST00000361654 CCDC85CA6NKD9 419 aa11.4□□□□□ -0.59
CLIP1-203ENST00000361654 ANKRD65E5RJM6 399 aa11.4□□□□□ -0.59
CLIP1-203ENST00000361654 KLRC1P26715 233 aa11.4□□□□□ -0.59
CLIP1-203ENST00000361654 RENBPP51606 427 aa11.4□□□□□ -0.59
CLIP1-203ENST00000361654 CCDC144BQ3MJ40 725 aa11.4□□□□□ -0.59
CLIP1-203ENST00000361654 HLA-DQA1Q5Y7H0 255 aa11.4□□□□□ -0.59
CLIP1-203ENST00000361654 HIBCHQ6NVY1 386 aaPredicted RBP11.4□□□□□ -0.59
CLIP1-203ENST00000361654 MTSS1LQ765P7 747 aa11.4□□□□□ -0.59
CLIP1-203ENST00000361654 ADGRF2Q8IZF7 708 aa11.4□□□□□ -0.59
CLIP1-203ENST00000361654 RNPC3Q96LT9 517 aaKnown RBP11.4□□□□□ -0.59
CLIP1-203ENST00000361654 ZCCHC17Q9NP64 241 aaKnown RBP11.4□□□□□ -0.59
CLIP1-203ENST00000361654 PITPNM2Q9BZ72 1349 aa11.4□□□□□ -0.59
CLIP1-203ENST00000361654 MYMKA6NI61 221 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 AP2B1P63010 937 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 DEFB115Q30KQ5 88 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 ZNF544Q6NX49 715 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 CATSPER3Q86XQ3 398 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 FBXO16Q8IX29 292 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-203ENST00000361654 GPC2Q8N158 579 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 DNERQ8NFT8 737 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 FAR2Q96K12 515 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 OSBPL9Q96SU4 736 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 ADGRE3Q9BY15 652 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 DDX47Q9H0S4 455 aaKnown RBP11.39□□□□□ -0.59
CLIP1-203ENST00000361654 GOLPH3Q9H4A6 298 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 DCTN4Q9UJW0 460 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 A0A087WZ62 844 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 PJA2O43164 708 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 PFDN1O60925 122 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 NDUFS2O75306 463 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 TNNI3P19429 210 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 GTF2E2P29084 291 aaKnown RBP11.39□□□□□ -0.59
CLIP1-203ENST00000361654 PRIM2P49643 509 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 PPIL2Q13356 520 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 CASP8Q14790 479 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 CCDC85BQ15834 202 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-203ENST00000361654 DIS3LQ8TF46 1054 aaKnown RBP11.39□□□□□ -0.59
CLIP1-203ENST00000361654 FBXO44Q9H4M3 255 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 ADAM21Q9UKJ8 722 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 TULP4Q9NRJ4 1543 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 SLC9A3R1O14745 358 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-203ENST00000361654 CSF1RP07333 972 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 VDRP11473 427 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 GTF2H1P32780 548 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 FDFT1P37268 417 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 PPP4CP60510 307 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 CREMQ03060 361 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 EFEMP1Q12805 493 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 SGO1Q5FBB7 561 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 GLRA4Q5JXX5 417 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 RGS9BPQ6ZS82 235 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 CATSPER1Q8NEC5 780 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 NKX2-3Q8TAU0 364 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 CYFIP2Q96F07 1278 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 THOC1Q96FV9 657 aaKnown RBP11.39□□□□□ -0.59
CLIP1-203ENST00000361654 MRPL1Q9BYD6 325 aaKnown RBP11.39□□□□□ -0.59
CLIP1-203ENST00000361654 CLPBQ9H078 707 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 ABHD16BQ9H3Z7 469 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 VTA1Q9NP79 307 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 XPO7Q9UIA9 1087 aaKnown RBP11.39□□□□□ -0.59
CLIP1-203ENST00000361654 SHROOM2Q13796 1616 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 SRP72O76094 671 aaKnown RBP11.39□□□□□ -0.59
CLIP1-203ENST00000361654 DDNO94850 711 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-203ENST00000361654 TRIM16O95361 564 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 MAGEA9P43362 315 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 CLEC10AQ8IUN9 316 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 SLC30A5Q8TAD4 765 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 ZDHHC15Q96MV8 337 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 FAM161BQ96MY7 647 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 ATXN3LQ9H3M9 355 aa11.39□□□□□ -0.59
CLIP1-203ENST00000361654 SCAF8Q9UPN6 1271 aaKnown RBP11.39□□□□□ -0.59
CLIP1-203ENST00000361654 H3BRB1 525 aa11.38□□□□□ -0.59
CLIP1-203ENST00000361654 CRTAMO95727 393 aa11.38□□□□□ -0.59
CLIP1-203ENST00000361654 VCAM1P19320 739 aa11.38□□□□□ -0.59
CLIP1-203ENST00000361654 WEE1P30291 646 aa11.38□□□□□ -0.59
CLIP1-203ENST00000361654 CDC16Q13042 620 aa11.38□□□□□ -0.59
CLIP1-203ENST00000361654 FAM83EQ2M2I3 478 aa11.38□□□□□ -0.59
CLIP1-203ENST00000361654 AASDHQ4L235 1098 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-203ENST00000361654 MYO1HQ8N1T3 1032 aa11.38□□□□□ -0.59
CLIP1-203ENST00000361654 SPATA18Q8TC71 538 aa11.38□□□□□ -0.59
CLIP1-203ENST00000361654 BLOC1S5Q8TDH9 187 aa11.38□□□□□ -0.59
CLIP1-203ENST00000361654 TUT1Q9H6E5 874 aaKnown RBP11.38□□□□□ -0.59
CLIP1-203ENST00000361654 SMG5Q9UPR3 1016 aaKnown RBP11.38□□□□□ -0.59
CLIP1-203ENST00000361654 TGFB3P10600 412 aa11.38□□□□□ -0.59
CLIP1-203ENST00000361654 TUFMP49411 452 aaKnown RBP11.38□□□□□ -0.59
CLIP1-203ENST00000361654 BCAT1P54687 386 aa11.38□□□□□ -0.59
CLIP1-203ENST00000361654 ITPK1Q13572 414 aa11.38□□□□□ -0.59
CLIP1-203ENST00000361654 CUL3Q13618 768 aa11.38□□□□□ -0.59
CLIP1-203ENST00000361654 AGR3Q8TD06 166 aa11.38□□□□□ -0.59
CLIP1-203ENST00000361654 MCOLN3Q8TDD5 553 aa11.38□□□□□ -0.59
CLIP1-203ENST00000361654 TFB1MQ8WVM0 346 aaKnown RBP11.38□□□□□ -0.59
CLIP1-203ENST00000361654 SPATC1LQ9H0A9 340 aa11.38□□□□□ -0.59
CLIP1-203ENST00000361654 TMEM117Q9H0C3 514 aa11.38□□□□□ -0.59
CLIP1-203ENST00000361654 TAF1DQ9H5J8 278 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-203ENST00000361654 STOML1Q9UBI4 398 aa11.38□□□□□ -0.59
CLIP1-203ENST00000361654 TBX20Q9UMR3 447 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms