RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 FRS2Q8WU20 508 aa2.53□□□□□ -2
VPS54-202ENST00000354504 DPF3Q92784 378 aa2.53□□□□□ -2
VPS54-202ENST00000354504 EEF2KMTQ96G04 330 aa2.53□□□□□ -2
VPS54-202ENST00000354504 HES6Q96HZ4 224 aa2.53□□□□□ -2
VPS54-202ENST00000354504 DYDC2Q96IM9 177 aa2.53□□□□□ -2
VPS54-202ENST00000354504 FCRL3Q96P31 734 aaPredicted RBP2.53□□□□□ -2
VPS54-202ENST00000354504 MMS19Q96T76 1030 aa2.53□□□□□ -2
VPS54-202ENST00000354504 BAG1Q99933 345 aaPredicted RBP2.53□□□□□ -2
VPS54-202ENST00000354504 PTPN18Q99952 460 aa2.53□□□□□ -2
VPS54-202ENST00000354504 PDCD2LQ9BRP1 358 aa2.53□□□□□ -2
VPS54-202ENST00000354504 DHRS4Q9BTZ2 278 aa2.53□□□□□ -2
VPS54-202ENST00000354504 NEUROG2Q9H2A3 272 aa2.53□□□□□ -2
VPS54-202ENST00000354504 NDST4Q9H3R1 872 aa2.53□□□□□ -2
VPS54-202ENST00000354504 C6orf50Q9HD87 102 aa2.53□□□□□ -2
VPS54-202ENST00000354504 TAS2R14Q9NYV8 317 aa2.53□□□□□ -2
VPS54-202ENST00000354504 L1RE1Q9UN81 338 aa2.53□□□□□ -2
VPS54-202ENST00000354504 PLA2G2DQ9UNK4 145 aa2.53□□□□□ -2
VPS54-202ENST00000354504 PRKAB1Q9Y478 270 aa2.53□□□□□ -2
VPS54-202ENST00000354504 GRIN2DO15399 1336 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 UMODL1Q5DID0 1318 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 A0A087X0T9 212 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 ERICH2A1L162 156 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 LRRC53A6NM62 1247 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 LRRIQ3A6PVS8 624 aaPredicted RBP2.53□□□□□ -2.01
VPS54-202ENST00000354504 FAM155AB1AL88 458 aaPredicted RBP2.53□□□□□ -2.01
VPS54-202ENST00000354504 PDXKO00764 312 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 ZNF185O15231 689 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 SLC16A3O15427 465 aaKnown RBP2.53□□□□□ -2.01
VPS54-202ENST00000354504 ZBTB7AO95365 584 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 FAM228BP0C875 321 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 GNA11P29992 359 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 CCT6AP40227 531 aaKnown RBP2.53□□□□□ -2.01
VPS54-202ENST00000354504 GALK1P51570 392 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 DRP2Q13474 957 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 CEP55Q53EZ4 464 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 SYT10Q6XYQ8 523 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 SFR1Q86XK3 245 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 ZDHHC13Q8IUH4 622 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 ARHGEF19Q8IW93 802 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 CCDC60Q8IWA6 550 aaPredicted RBP2.53□□□□□ -2.01
VPS54-202ENST00000354504 ANKRD13AQ8IZ07 590 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 SCYL3Q8IZE3 742 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 GPC2Q8N158 579 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 BVESQ8NE79 360 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 SCFD2Q8WU76 684 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 PSPC1Q8WXF1 523 aaKnown RBP2.53□□□□□ -2.01
VPS54-202ENST00000354504 CCDC51Q96ER9 411 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 RIT2Q99578 217 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 AMNQ9BXJ7 453 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 KRTAP4-7Q9BYR0 210 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 ASPSCR1Q9BZE9 553 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 FOXQ1Q9C009 403 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 ATXN3LQ9H3M9 355 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 DHX33Q9H6R0 707 aaKnown RBP2.53□□□□□ -2.01
VPS54-202ENST00000354504 NHEJ1Q9H9Q4 299 aaPredicted RBP2.53□□□□□ -2.01
VPS54-202ENST00000354504 PLAC1Q9HBJ0 212 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 A1CFQ9NQ94 594 aaKnown RBP2.53□□□□□ -2.01
VPS54-202ENST00000354504 CHST12Q9NRB3 414 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 EHD2Q9NZN4 543 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 RBPJLQ9UBG7 517 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 NDOR1Q9UHB4 597 aa2.53□□□□□ -2.01
VPS54-202ENST00000354504 SSU72P8A0A1W2PR75 194 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 ANKRD34BA5PLL1 514 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 AKR1B15C9JRZ8 316 aaPredicted RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 NEMP1O14524 444 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 FARP2O94887 1054 aaPredicted RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 CBX7O95931 251 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 PDGFRBP09619 1106 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 FAM87AP0C7U9 286 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 JMJD7P0C870 316 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 SRFP11831 508 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 UNGP13051 313 aaPredicted RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 TNNT1P13805 278 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 IVDP26440 423 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 NMT1P30419 496 aaKnown RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 STAT6P42226 847 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 AARSP49588 968 aaKnown RBP eCLIP2.52□□□□□ -2.011e-7■■■■■ 41.2
VPS54-202ENST00000354504 SOX10P56693 466 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 RTP1P59025 263 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 RPS6P62753 249 aaKnown RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 ZBED6P86452 979 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 VGLL4Q14135 290 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 NAB2Q15742 525 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 UAP1Q16222 522 aaPredicted RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 ERCC6LQ2NKX8 1250 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 ZBTB41Q5SVQ8 909 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 RRAGBQ5VZM2 374 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 HAUS3Q68CZ6 603 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 HEATR6Q6AI08 1181 aaKnown RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 IQCEQ6IPM2 695 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 CC2D1AQ6P1N0 951 aaPredicted RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 FDX2Q6P4F2 183 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 FRMD5Q7Z6J6 570 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 RBM12BQ8IXT5 1001 aaKnown RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 C4orf19Q8IY42 314 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 SLC35F6Q8N357 371 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 FBXL6Q8N531 539 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 WDTC1Q8N5D0 677 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 ARFGAP1Q8N6T3 406 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 SUPT20HQ8NEM7 779 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms