RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 LONRF1Q17RB8 773 aa13.08□□□□□ -0.31
COL6A3-203ENST00000353578 SLC22A9Q8IVM8 553 aa13.08□□□□□ -0.31
COL6A3-203ENST00000353578 RFT1Q96AA3 541 aa13.08□□□□□ -0.31
COL6A3-203ENST00000353578 SLC8A2Q9UPR5 921 aa13.08□□□□□ -0.31
COL6A3-203ENST00000353578 PDXKO00764 312 aa13.08□□□□□ -0.31
COL6A3-203ENST00000353578 PCSK2P16519 638 aa13.08□□□□□ -0.31
COL6A3-203ENST00000353578 ECSITQ9BQ95 431 aa13.08□□□□□ -0.31
COL6A3-203ENST00000353578 RSAD1Q9HA92 442 aa13.08□□□□□ -0.31
COL6A3-203ENST00000353578 PICALMQ13492 652 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 EPC2Q52LR7 807 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 CYP4Z1Q86W10 505 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 SLC5A4Q9NY91 659 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 SH3BP4Q9P0V3 963 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 PCDHGA10Q9Y5H3 936 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 KIAA0556O60303 1618 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 AATKQ6ZMQ8 1374 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 LRRIQ4A6NIV6 560 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 SDC4P31431 198 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 TTC23Q5W5X9 447 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 TOR1AIP2Q8NFQ8 470 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 Q96MT0 163 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 AVENQ9NQS1 362 aaPredicted RBP13.08□□□□□ -0.32
COL6A3-203ENST00000353578 CEP170Q5SW79 1584 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 RBBP7Q16576 425 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 KNOP1Q1ED39 458 aaKnown RBP13.08□□□□□ -0.32
COL6A3-203ENST00000353578 RNPEPQ9H4A4 650 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 SHOC2Q9UQ13 582 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 FRMPD1Q5SYB0 1578 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 ALADP13716 330 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 KCNMA1Q12791 1236 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 NDUFAF6Q330K2 333 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 NOA1Q8NC60 698 aaKnown RBP13.08□□□□□ -0.32
COL6A3-203ENST00000353578 OXNAD1Q96HP4 312 aaPredicted RBP13.08□□□□□ -0.32
COL6A3-203ENST00000353578 PAGR1Q9BTK6 254 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 DHX36Q9H2U1 1008 aaKnown RBP13.08□□□□□ -0.32
COL6A3-203ENST00000353578 GSTK1Q9Y2Q3 226 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 MYO1GB0I1T2 1018 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 MLXQ9UH92 298 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 TSC22D2O75157 780 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 C16orf62Q7Z3J2 963 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 SCFD2Q8WU76 684 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 ASB2Q96Q27 587 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 MYL10Q9BUA6 226 aa13.08□□□□□ -0.32
COL6A3-203ENST00000353578 PLK4O00444 970 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 MND1Q9BWT6 205 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 PDLIM1O00151 329 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 HUS1O60921 280 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 TCF4P15884 667 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 ERP29P30040 261 aaKnown RBP13.07□□□□□ -0.32
COL6A3-203ENST00000353578 QARSP47897 775 aaKnown RBP13.07□□□□□ -0.32
COL6A3-203ENST00000353578 NAA30Q147X3 362 aaPredicted RBP13.07□□□□□ -0.32
COL6A3-203ENST00000353578 TMCO6Q96DC7 493 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 RNFT2Q96EX2 444 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 HDHD2Q9H0R4 259 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 KMT5AQ9NQR1 393 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 HIBADHP31937 336 aaKnown RBP13.07□□□□□ -0.32
COL6A3-203ENST00000353578 GSCP56915 257 aaPredicted RBP13.07□□□□□ -0.32
COL6A3-203ENST00000353578 CCDC81Q6ZN84 652 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 ARID3BQ8IVW6 561 aaPredicted RBP13.07□□□□□ -0.32
COL6A3-203ENST00000353578 IRGMA1A4Y4 181 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 CLOCKO15516 846 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 NUP93Q8N1F7 819 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 KIAA1210Q9ULL0 1709 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 UMODL1Q5DID0 1318 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 TNFRSF21O75509 655 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 STIP1P31948 543 aaKnown RBP13.07□□□□□ -0.32
COL6A3-203ENST00000353578 SLC26A3P40879 764 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 MRPL39Q9NYK5 338 aaKnown RBP13.07□□□□□ -0.32
COL6A3-203ENST00000353578 ANKRD6Q9Y2G4 727 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 HIRAP54198 1017 aaPredicted RBP13.07□□□□□ -0.32
COL6A3-203ENST00000353578 MTDHQ86UE4 582 aaKnown RBP13.07□□□□□ -0.32
COL6A3-203ENST00000353578 TRMUO75648 421 aaKnown RBP13.07□□□□□ -0.32
COL6A3-203ENST00000353578 AP3S2P59780 193 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 C11orf63Q6NUN7 778 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 RAB42Q8N4Z0 105 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 PCDHA1Q9Y5I3 950 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 FDFT1P37268 417 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 PRCPP42785 496 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 HSF2Q03933 536 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 CTDSPL2Q05D32 466 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 COMMD9Q9P000 198 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 PLAGL2Q9UPG8 496 aa13.07□□□□□ -0.32
COL6A3-203ENST00000353578 ACEP12821 1306 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 LDLRP01130 860 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 KYAT3Q6YP21 454 aaKnown RBP13.06□□□□□ -0.32
COL6A3-203ENST00000353578 MAB21L3Q8N8X9 362 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 TATDN2Q93075 761 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 GRIP2Q9C0E4 1043 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 LRRC4Q9HBW1 653 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 NEURL1BA8MQ27 555 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 F8A1P23610 371 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 ADSSP30520 456 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 LEMD2Q8NC56 503 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 ZC3H12CQ9C0D7 883 aaKnown RBP13.06□□□□□ -0.32
COL6A3-203ENST00000353578 NCKIPSDQ9NZQ3 722 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 TET3O43151 1660 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 CCNE2O96020 404 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 IFNA7P01567 189 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 TMEM253P0C7T8 217 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 CAPGP40121 348 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms