RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 CTCFP49711 727 aaPredicted RBP18.27■□□□□ 0.52
SMAD4-201ENST00000342988 VBP1P61758 197 aa18.27■□□□□ 0.52
SMAD4-201ENST00000342988 MTMR1Q13613 665 aa18.27■□□□□ 0.52
SMAD4-201ENST00000342988 ARMCX6Q7L4S7 300 aa18.27■□□□□ 0.52
SMAD4-201ENST00000342988 CLHC1Q8NHS4 586 aa18.27■□□□□ 0.52
SMAD4-201ENST00000342988 FAM172AQ8WUF8 416 aa18.27■□□□□ 0.52
SMAD4-201ENST00000342988 B3GALT6Q96L58 329 aa18.27■□□□□ 0.52
SMAD4-201ENST00000342988 MYL4P12829 197 aa18.27■□□□□ 0.52
SMAD4-201ENST00000342988 KCNJ6P48051 423 aa18.27■□□□□ 0.52
SMAD4-201ENST00000342988 VAMP7P51809 220 aa18.27■□□□□ 0.52
SMAD4-201ENST00000342988 EIF4A2Q14240 407 aaKnown RBP18.27■□□□□ 0.52
SMAD4-201ENST00000342988 SPIRE2Q8WWL2 714 aa18.27■□□□□ 0.52
SMAD4-201ENST00000342988 MMP1P03956 469 aa18.27■□□□□ 0.52
SMAD4-201ENST00000342988 ZBTB39O15060 712 aa18.27■□□□□ 0.51
SMAD4-201ENST00000342988 MAGEA2P43356 314 aa18.27■□□□□ 0.51
SMAD4-201ENST00000342988 PROSER1Q86XN7 944 aa18.27■□□□□ 0.51
SMAD4-201ENST00000342988 VPS35Q96QK1 796 aa18.27■□□□□ 0.51
SMAD4-201ENST00000342988 GOLPH3Q9H4A6 298 aa18.27■□□□□ 0.51
SMAD4-201ENST00000342988 STX16-NPEPL1H3BU86 382 aa18.27■□□□□ 0.51
SMAD4-201ENST00000342988 STX16O14662 325 aa18.27■□□□□ 0.51
SMAD4-201ENST00000342988 TPRKBQ9Y3C4 175 aa18.27■□□□□ 0.51
SMAD4-201ENST00000342988 BCLAF3A2AJT9 711 aaKnown RBP18.26■□□□□ 0.51
SMAD4-201ENST00000342988 ZNF879B4DU55 563 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 RTN3O95197 1032 aaPredicted RBP18.26■□□□□ 0.51
SMAD4-201ENST00000342988 HIST1H2ABP04908 130 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 MSR1P21757 451 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 TTLL4Q14679 1199 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 ARHGAP27Q6ZUM4 889 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 HIST3H2AQ7L7L0 130 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 RORBQ92753 470 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 HIST1H2ACQ93077 130 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 SENP2Q9HC62 589 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 NR3C1P04150 777 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 CCNG1P51959 295 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 BNC1Q01954 994 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 POTECB2RU33 542 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 BTKQ06187 659 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 TRAF2Q12933 501 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 DPCR1Q3MIW9 517 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 MAPRE3Q9UPY8 281 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 B2RBV5 119 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 RAB25P57735 213 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 ZCCHC7Q8N3Z6 543 aaKnown RBP18.26■□□□□ 0.51
SMAD4-201ENST00000342988 AHSPQ9NZD4 102 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 CDK13Q14004 1512 aaKnown RBP18.26■□□□□ 0.51
SMAD4-201ENST00000342988 RPRD2Q5VT52 1461 aaKnown RBP18.26■□□□□ 0.51
SMAD4-201ENST00000342988 KIF28PB7ZC32 967 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 RBMXL2O75526 392 aaKnown RBP18.26■□□□□ 0.51
SMAD4-201ENST00000342988 NFX1Q12986 1120 aaKnown RBP18.26■□□□□ 0.51
SMAD4-201ENST00000342988 CYFIP1Q7L576 1253 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 USP33Q8TEY7 942 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 CENPIQ92674 756 aaPredicted RBP18.26■□□□□ 0.51
SMAD4-201ENST00000342988 RTN2O75298 545 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 VAV1P15498 845 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 LRRC41Q15345 812 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 LPCAT2Q7L5N7 544 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 SYTL1Q8IYJ3 562 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 POLR3AO14802 1390 aaPredicted RBP18.26■□□□□ 0.51
SMAD4-201ENST00000342988 RNASEH1O60930 286 aaKnown RBP18.26■□□□□ 0.51
SMAD4-201ENST00000342988 SFNP31947 248 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 HARS2P49590 506 aaKnown RBP18.26■□□□□ 0.51
SMAD4-201ENST00000342988 LRIG3Q6UXM1 1119 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 CCDC80Q76M96 950 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 SUCLG2Q96I99 432 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 MANSC1Q9H8J5 431 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 CAB39LQ9H9S4 337 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 NUP160Q12769 1436 aa18.26■□□□□ 0.51
SMAD4-201ENST00000342988 VAMP4O75379 141 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 MTTPP55157 894 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 LRRC14Q15048 493 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 POLD3Q15054 466 aaPredicted RBP18.25■□□□□ 0.51
SMAD4-201ENST00000342988 UNC13DQ70J99 1090 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 GHRP10912 638 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 XDHP47989 1333 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 FGFR4P22455 802 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 MDH1P40925 334 aaKnown RBP18.25■□□□□ 0.51
SMAD4-201ENST00000342988 SCRN1Q12765 414 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 IL31Q6EBC2 164 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 KIAA0825Q8IV33 1275 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 RIBC2Q9H4K1 309 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 PCMTD2Q9NV79 361 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 WBP11Q9Y2W2 641 aaKnown RBP18.25■□□□□ 0.51
SMAD4-201ENST00000342988 H7C1W4 665 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 CD3EAPO15446 510 aaKnown RBP18.25■□□□□ 0.51
SMAD4-201ENST00000342988 ANXA6P08133 673 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 ATP6V1B2P21281 511 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 SULT1E1P49888 294 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 AKR1D1P51857 326 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 KCNH2Q12809 1159 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 PTK7Q13308 1070 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 PDK1Q15118 436 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 MYH13Q9UKX3 1938 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 UGGT2Q9NYU1 1516 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 CD2BP2O95400 341 aaKnown RBP18.25■□□□□ 0.51
SMAD4-201ENST00000342988 TSPAN19P0C672 248 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 PREPLQ4J6C6 727 aaPredicted RBP18.25■□□□□ 0.51
SMAD4-201ENST00000342988 PCSK1NQ9UHG2 260 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 RPAP1Q9BWH6 1393 aaPredicted RBP18.25■□□□□ 0.51
SMAD4-201ENST00000342988 IL2P60568 153 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 STILQ15468 1287 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms