RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 ZFYVE1Q9HBF4 777 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 UTP6Q9NYH9 597 aaKnown RBP9.04□□□□□ -0.96
RTN3-202ENST00000339997 RAB21Q9UL25 225 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 MED14O60244 1454 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 ADGRB3O60242 1522 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 C3orf70A6NLC5 250 aaPredicted RBP9.04□□□□□ -0.96
RTN3-202ENST00000339997 ARHGEF9O43307 516 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 SERPIND1P05546 499 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 MYL3P08590 195 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 CTSHP09668 335 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 NELFEP18615 380 aaKnown RBP9.04□□□□□ -0.96
RTN3-202ENST00000339997 ANXA13P27216 316 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 RCAN1P53805 252 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 PDIA6Q15084 440 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 PKN2Q16513 984 aaKnown RBP9.04□□□□□ -0.96
RTN3-202ENST00000339997 COL23A1Q86Y22 540 aaPredicted RBP9.04□□□□□ -0.96
RTN3-202ENST00000339997 CCDC60Q8IWA6 550 aaPredicted RBP9.04□□□□□ -0.96
RTN3-202ENST00000339997 FEZF2Q8TBJ5 459 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 TCP10LQ8TDR4 215 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 KRT35Q92764 455 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 MPP4Q96JB8 637 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 THUMPD3Q9BV44 507 aaKnown RBP9.04□□□□□ -0.96
RTN3-202ENST00000339997 PAIP1Q9H074 479 aaKnown RBP9.04□□□□□ -0.96
RTN3-202ENST00000339997 JPH1Q9HDC5 661 aaPredicted RBP9.04□□□□□ -0.96
RTN3-202ENST00000339997 TEKT2Q9UIF3 430 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 GRID1Q9ULK0 1009 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 C15orf41Q9Y2V0 281 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 C1orf232A0A0U1RR37 186 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 A0A1W2PQJ5 194 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 TISP43B9A030 160 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 RNF225M0QZC1 329 aaPredicted RBP9.04□□□□□ -0.96
RTN3-202ENST00000339997 TSC22D2O75157 780 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 PRKCBP05771 671 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 FGFR3P22607 806 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 LAMC2Q13753 1193 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 DDX39BQ13838 428 aaKnown RBP9.04□□□□□ -0.96
RTN3-202ENST00000339997 KRT33BQ14525 404 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 INPP5AQ14642 412 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 NTRK3Q16288 839 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 ARMC3Q5W041 872 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 SLC44A2Q8IWA5 706 aaPredicted RBP9.04□□□□□ -0.96
RTN3-202ENST00000339997 GANCQ8TET4 914 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.04□□□□□ -0.96
RTN3-202ENST00000339997 ERLEC1Q96DZ1 483 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 OTUD5Q96G74 571 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 GCNAQ96QF7 691 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 SEPHS2Q99611 448 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 APOL5Q9BWW9 433 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 FAM96AQ9H5X1 160 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 SLCO1B3Q9NPD5 702 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 DONSONQ9NYP3 566 aa9.04□□□□□ -0.96
RTN3-202ENST00000339997 NRKQ7Z2Y5 1582 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 ADRA1DP25100 572 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 CHRNA5P30532 468 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 GPR162Q16538 588 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 TMC3Q7Z5M5 1100 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 TXNRD3Q86VQ6 643 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 TMCO5AQ8N6Q1 288 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 SHCBP1Q8NEM2 672 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 PPHLN1Q8NEY8 458 aaKnown RBP9.03□□□□□ -0.96
RTN3-202ENST00000339997 USP6NLQ92738 828 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 CHCHD3Q9NX63 227 aaKnown RBP9.03□□□□□ -0.96
RTN3-202ENST00000339997 ADGRB2O60241 1585 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 DEAF1O75398 565 aaPredicted RBP9.03□□□□□ -0.96
RTN3-202ENST00000339997 SNUPNO95149 360 aaKnown RBP9.03□□□□□ -0.96
RTN3-202ENST00000339997 KLHL2O95198 593 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 ACADSP16219 412 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 RPA1P27694 616 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 HMOX2P30519 316 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 MSX2P35548 267 aaPredicted RBP9.03□□□□□ -0.96
RTN3-202ENST00000339997 KPNB1Q14974 876 aaKnown RBP9.03□□□□□ -0.96
RTN3-202ENST00000339997 SUGP1Q8IWZ8 645 aaKnown RBP9.03□□□□□ -0.96
RTN3-202ENST00000339997 ACTL9Q8TC94 416 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 QTRT2Q9H974 415 aaKnown RBP9.03□□□□□ -0.96
RTN3-202ENST00000339997 KCNH7Q9NS40 1196 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 KBTBD4Q9NVX7 518 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 ARHGEF38Q9NXL2 777 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 CLIC5Q9NZA1 410 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 MSH4O15457 936 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 CYP11B1P15538 503 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 PHKA2P46019 1235 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 NEDD8Q15843 81 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 NRF1Q16656 503 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 SLC7A14Q8TBB6 771 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 KAT5Q92993 513 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 TATDN2Q93075 761 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 OPTNQ96CV9 577 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 MYLK2Q9H1R3 596 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.03□□□□□ -0.964e-10■■■■□ 20.1
RTN3-202ENST00000339997 CDYLQ9Y232 598 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 CRB1P82279 1406 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 LMTK2Q8IWU2 1503 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 EFCAB14O75071 495 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 NPTXRO95502 500 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 PKNOX1P55347 436 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 ELF3P78545 371 aaPredicted RBP9.03□□□□□ -0.96
RTN3-202ENST00000339997 RRM2BQ7LG56 351 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 POLNQ7Z5Q5 900 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 PTAR1Q7Z6K3 402 aaPredicted RBP9.03□□□□□ -0.96
RTN3-202ENST00000339997 PARP8Q8N3A8 854 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms