RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 RAD54LQ92698 747 aa8.54□□□□□ -1.04
VPS41-202ENST00000310301 ZNF560Q96MR9 790 aa8.54□□□□□ -1.04
VPS41-202ENST00000310301 NDEL1Q9GZM8 345 aa8.54□□□□□ -1.04
VPS41-202ENST00000310301 SCN3BQ9NY72 215 aa8.54□□□□□ -1.04
VPS41-202ENST00000310301 DDX56Q9NY93 547 aaKnown RBP8.54□□□□□ -1.04
VPS41-202ENST00000310301 PSMC3IPQ9P2W1 217 aaPredicted RBP8.54□□□□□ -1.04
VPS41-202ENST00000310301 LTN1O94822 1766 aa8.54□□□□□ -1.04
VPS41-202ENST00000310301 RPTORQ8N122 1335 aa8.54□□□□□ -1.04
VPS41-202ENST00000310301 CLDN3O15551 220 aa8.54□□□□□ -1.04
VPS41-202ENST00000310301 SHMT1P34896 483 aa8.54□□□□□ -1.04
VPS41-202ENST00000310301 TMEM270Q6UE05 265 aa8.54□□□□□ -1.04
VPS41-202ENST00000310301 KDM7AQ6ZMT4 941 aa8.54□□□□□ -1.04
VPS41-202ENST00000310301 CCDC81Q6ZN84 652 aa8.54□□□□□ -1.04
VPS41-202ENST00000310301 SYDE1Q6ZW31 735 aaPredicted RBP8.54□□□□□ -1.04
VPS41-202ENST00000310301 HAUS6Q7Z4H7 955 aa8.54□□□□□ -1.04
VPS41-202ENST00000310301 RASAL3Q86YV0 1011 aa8.54□□□□□ -1.04
VPS41-202ENST00000310301 LRRC34Q8IZ02 419 aa8.54□□□□□ -1.04
VPS41-202ENST00000310301 KCTD17Q8N5Z5 321 aa8.54□□□□□ -1.04
VPS41-202ENST00000310301 MRPL9Q9BYD2 267 aaKnown RBP8.54□□□□□ -1.04
VPS41-202ENST00000310301 MRPS26Q9BYN8 205 aaKnown RBP8.54□□□□□ -1.04
VPS41-202ENST00000310301 AP4S1Q9Y587 144 aa8.54□□□□□ -1.04
VPS41-202ENST00000310301 HUS1O60921 280 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 DGKIO75912 1065 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 NFKBIAP25963 317 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 PEX3P56589 373 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 ABCE1P61221 599 aaKnown RBP8.53□□□□□ -1.04
VPS41-202ENST00000310301 P3H1Q32P28 736 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 ZNF568Q3ZCX4 644 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 LVRNQ6Q4G3 990 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 MXRA8Q9BRK3 442 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 TRIM8Q9BZR9 551 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 RNF186Q9NXI6 227 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 RASSF9O75901 435 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 MB21D2Q8IYB1 491 aaPredicted RBP8.53□□□□□ -1.04
VPS41-202ENST00000310301 PPHLN1Q8NEY8 458 aaKnown RBP8.53□□□□□ -1.04
VPS41-202ENST00000310301 PIGOQ8TEQ8 1089 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 IFT43Q96FT9 208 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 C11orf49Q9H6J7 331 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 SAGE1Q9NXZ1 904 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 TSR3Q9UJK0 312 aaKnown RBP8.53□□□□□ -1.04
VPS41-202ENST00000310301 SLC26A4O43511 780 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 ATP6V1G2O95670 118 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 INHAP05111 366 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 MYBL1P10243 752 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 EIF2B2P49770 351 aaKnown RBP8.53□□□□□ -1.04
VPS41-202ENST00000310301 NLRP11P59045 1033 aaKnown RBP8.53□□□□□ -1.04
VPS41-202ENST00000310301 CRHR2Q13324 411 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 SYCP2LQ5T4T6 812 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 DEFB128Q7Z7B8 93 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 IFNEQ86WN2 208 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 FBXO16Q8IX29 292 aaPredicted RBP8.53□□□□□ -1.04
VPS41-202ENST00000310301 C7orf61Q8IZ16 206 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 NOA1Q8NC60 698 aaKnown RBP8.53□□□□□ -1.04
VPS41-202ENST00000310301 RNF139Q8WU17 664 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 HNRNPLLQ8WVV9 542 aaKnown RBP8.53□□□□□ -1.04
VPS41-202ENST00000310301 ASZ1Q8WWH4 475 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 HHIPL1Q96JK4 782 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 RBM15Q96T37 977 aaKnown RBP eCLIP8.53□□□□□ -1.04
VPS41-202ENST00000310301 OSBPL8Q9BZF1 889 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 ZNF212Q9UDV6 495 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 MCM8Q9UJA3 840 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 HAO1Q9UJM8 370 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 FHOD1Q9Y613 1164 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 FOXP2O15409 715 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 FAM200BP0CF97 657 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 CDC27P30260 824 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 RAB27AP51159 221 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 ELAVL2Q12926 359 aaKnown RBP8.53□□□□□ -1.04
VPS41-202ENST00000310301 ITIH4Q14624 930 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 RRM2BQ7LG56 351 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 ABRAQ8N0Z2 381 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 MYCBPAPQ8TBZ2 947 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 OXER1Q8TDS5 423 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 LY9Q9HBG7 655 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 NSMCE4AQ9NXX6 385 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 KANSL3Q9P2N6 904 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 POTEMA6NI47 508 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 CAND2O75155 1236 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 KRT7P08729 469 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 ITIH2P19823 946 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 SHC4Q6S5L8 630 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 PADI6Q6TGC4 694 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 METTL7BQ6UX53 244 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 SAPCD2Q86UD0 394 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 MTERF3Q96E29 417 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 C9orf72Q96LT7 481 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 TAAR1Q96RJ0 339 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.53□□□□□ -1.04
VPS41-202ENST00000310301 MANSC1Q9H8J5 431 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 TUBE1Q9UJT0 475 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 MKL2Q9ULH7 1088 aa8.53□□□□□ -1.04
VPS41-202ENST00000310301 TMA7Q9Y2S6 64 aaKnown RBP8.53□□□□□ -1.04
VPS41-202ENST00000310301 ARIH1Q9Y4X5 557 aaPredicted RBP8.53□□□□□ -1.04
VPS41-202ENST00000310301 COL1A1P02452 1464 aaPredicted RBP8.52□□□□□ -1.04
VPS41-202ENST00000310301 PVALEFA0A1B0GWK0 134 aa8.52□□□□□ -1.04
VPS41-202ENST00000310301 E5RI56 91 aa8.52□□□□□ -1.04
VPS41-202ENST00000310301 KIAA0391O15091 583 aaKnown RBP8.52□□□□□ -1.04
VPS41-202ENST00000310301 PLEKHA7Q6IQ23 1121 aa8.52□□□□□ -1.04
VPS41-202ENST00000310301 CLEC10AQ8IUN9 316 aa8.52□□□□□ -1.04
VPS41-202ENST00000310301 CDKL3Q8IVW4 592 aaPredicted RBP8.52□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms