RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SCFD2Q8WU76 684 aa18.03■□□□□ 0.48
SYNPO-201ENST00000307662 CATSPER2Q96P56 530 aa18.03■□□□□ 0.48
SYNPO-201ENST00000307662 TMEM245Q9H330 911 aa18.03■□□□□ 0.48
SYNPO-201ENST00000307662 ACAD9Q9H845 621 aa18.03■□□□□ 0.48
SYNPO-201ENST00000307662 ATXN8OSP0DMR3 200 aa18.03■□□□□ 0.48
SYNPO-201ENST00000307662 BLVRAP53004 296 aa18.03■□□□□ 0.48
SYNPO-201ENST00000307662 TTLL4Q14679 1199 aa18.03■□□□□ 0.48
SYNPO-201ENST00000307662 GJC2Q5T442 439 aaPredicted RBP18.03■□□□□ 0.48
SYNPO-201ENST00000307662 SNX30Q5VWJ9 437 aa18.03■□□□□ 0.48
SYNPO-201ENST00000307662 PLEKHM3Q6ZWE6 761 aa18.03■□□□□ 0.48
SYNPO-201ENST00000307662 OPTNQ96CV9 577 aa18.03■□□□□ 0.48
SYNPO-201ENST00000307662 TRAPPC9Q96Q05 1148 aa18.03■□□□□ 0.48
SYNPO-201ENST00000307662 MFN1Q8IWA4 741 aa18.03■□□□□ 0.48
SYNPO-201ENST00000307662 SH2D3AQ9BRG2 576 aa18.03■□□□□ 0.48
SYNPO-201ENST00000307662 INO80Q9ULG1 1556 aaPredicted RBP18.03■□□□□ 0.48
SYNPO-201ENST00000307662 ZNF280CQ8ND82 737 aa18.03■□□□□ 0.48
SYNPO-201ENST00000307662 METTL5Q9NRN9 209 aaKnown RBP18.03■□□□□ 0.48
SYNPO-201ENST00000307662 KCNQ2O43526 872 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 NDUFS3O75489 264 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 RASSF9O75901 435 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 GRB10Q13322 594 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 MPP4Q96JB8 637 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 FAR2Q96K12 515 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 SFMBT1Q9UHJ3 866 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 CEMIPQ8WUJ3 1361 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 ZNF839A8K0R7 811 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 GRAP2O75791 330 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 FAM58BPP0C7Q3 252 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 PTENP60484 403 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 ZNF844Q08AG5 666 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 PLEKHA7Q6IQ23 1121 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 SPATA33Q96N06 139 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 DNAJC16Q9Y2G8 782 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 FOXN3O00409 490 aaPredicted RBP18.02■□□□□ 0.48
SYNPO-201ENST00000307662 PRPF4O43172 522 aaKnown RBP eCLIP18.02■□□□□ 0.48
SYNPO-201ENST00000307662 RIPK2O43353 540 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 ZNF23P17027 643 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 TFE3P19532 575 aaPredicted RBP18.02■□□□□ 0.48
SYNPO-201ENST00000307662 FDFT1P37268 417 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 LUZP2Q86TE4 346 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 TMEM143Q96AN5 459 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 BTBD10Q9BSF8 475 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 AGPAT3Q9NRZ7 376 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 CD274Q9NZQ7 290 aa18.02■□□□□ 0.48
SYNPO-201ENST00000307662 EXTL3O43909 919 aa18.02■□□□□ 0.47
SYNPO-201ENST00000307662 CLASP2O75122 1294 aaKnown RBP18.02■□□□□ 0.47
SYNPO-201ENST00000307662 PTGER2P43116 358 aa18.02■□□□□ 0.47
SYNPO-201ENST00000307662 SLC20A2Q08357 652 aa18.02■□□□□ 0.47
SYNPO-201ENST00000307662 FUKQ8N0W3 1084 aa18.02■□□□□ 0.47
SYNPO-201ENST00000307662 PI4K2AQ9BTU6 479 aa18.02■□□□□ 0.47
SYNPO-201ENST00000307662 STMN3Q9NZ72 180 aa18.02■□□□□ 0.47
SYNPO-201ENST00000307662 MAP2K7O14733 419 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 CCDC142Q17RM4 750 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 ZKSCAN4Q969J2 545 aaPredicted RBP18.01■□□□□ 0.47
SYNPO-201ENST00000307662 TNPO2O14787 897 aaKnown RBP18.01■□□□□ 0.47
SYNPO-201ENST00000307662 ZNF263O14978 683 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 SGPL1O95470 568 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 HIST1H2AGP0C0S8 130 aaPredicted RBP18.01■□□□□ 0.47
SYNPO-201ENST00000307662 HIST1H2ADP20671 130 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 PDIA6Q15084 440 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 TMPRSS6Q8IU80 811 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 HIST1H2AHQ96KK5 128 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 HIST1H2AJQ99878 128 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 ECSITQ9BQ95 431 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 H2AFJQ9BTM1 129 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 SEMA4AQ9H3S1 761 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 SOX13Q9UN79 622 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 SNX9Q9Y5X1 595 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 ADGRA2Q96PE1 1338 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.01■□□□□ 0.47
SYNPO-201ENST00000307662 FAM200BP0CF97 657 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 SERPINB8P50452 374 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 PTK6Q13882 451 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 FAM83EQ2M2I3 478 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 IRGCQ6NXR0 463 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 TMC3Q7Z5M5 1100 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 GLMNQ92990 594 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 ACSF2Q96CM8 615 aaPredicted RBP18.01■□□□□ 0.47
SYNPO-201ENST00000307662 NIF3L1Q9GZT8 377 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 SEMA6BQ9H3T3 888 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 NAALADL1Q9UQQ1 740 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 FLT1P17948 1338 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 FAM95CA0A1B0GW59 222 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 BGNP21810 368 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 DCAF4L1Q3SXM0 396 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 CENPPQ6IPU0 288 aa18.01■□□□□ 0.47
SYNPO-201ENST00000307662 POLRMTO00411 1230 aaKnown RBP18■□□□□ 0.47
SYNPO-201ENST00000307662 TOB1P50616 345 aaPredicted RBP18■□□□□ 0.47
SYNPO-201ENST00000307662 STAT5BP51692 787 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 OTUD4Q01804 1114 aaKnown RBP18■□□□□ 0.47
SYNPO-201ENST00000307662 NAPEPLDQ6IQ20 393 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 LPCAT2Q7L5N7 544 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 BBS7Q8IWZ6 715 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 GDF3Q9NR23 364 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 STAU2Q9NUL3 570 aaKnown RBP eCLIP18■□□□□ 0.47
SYNPO-201ENST00000307662 KANSL1LA0AUZ9 987 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 MTSS1O43312 755 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 CAMTA2O94983 1202 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 CYP4A22Q5TCH4 519 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 THEMIS2Q5TEJ8 643 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms