RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ARMC3Q5W041 872 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 CCDC60Q8IWA6 550 aaPredicted RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 TPH2Q8IWU9 490 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 ZCCHC9Q8N567 271 aaKnown RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 SUPT20HQ8NEM7 779 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 MMTAG2Q9BU76 263 aaKnown RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 SERPINB13Q9UIV8 391 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 DCTN4Q9UJW0 460 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 CCDC195A0A1B0GUA6 201 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 PEX14O75381 377 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 TNFRSF21O75509 655 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 FAM155BO75949 473 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 LSM8O95777 96 aaKnown RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 OAS1P00973 400 aaKnown RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 HSPA1AP0DMV8 641 aaKnown RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 HSPA1BP0DMV9 641 aaKnown RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 PRKAA2P54646 552 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 EIF2B5Q13144 721 aaKnown RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 MED21Q13503 144 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 SLFN12LQ6IEE8 588 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 CCDC81Q6ZN84 652 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 WDR48Q8TAF3 677 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 ATP8B4Q8TF62 1192 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 TTC17Q96AE7 1141 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 TRABDQ9H4I3 376 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 MLXIPLQ9NP71 852 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 TBC1D22BQ9NU19 505 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 KCNK4Q9NYG8 393 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 IP6K2Q9UHH9 426 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 MINPP1Q9UNW1 487 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 SPATA31A1Q5TZJ5 1347 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 TCP11X1B4DZS4 312 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 F8W031 263 aaPredicted RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 PI4K2BG5E9Z4 385 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 AREL1O15033 823 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 EDF1O60869 148 aaKnown RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 CAMTA2O94983 1202 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 CCDC130P13994 396 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 ACAT1P24752 427 aaKnown RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 CASP1P29466 404 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 MAPK4P31152 587 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 GJA8P48165 433 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 PEX5P50542 639 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 ALDH5A1P51649 535 aaPredicted RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 JAK3P52333 1124 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 ATXN3P54252 364 aaPredicted RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 CDCA2Q69YH5 1023 aaPredicted RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 KLHL17Q6TDP4 642 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 MTHFD1LQ6UB35 978 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 LAYNQ6UX15 382 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 MYCT1Q8N699 235 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 NAT9Q9BTE0 207 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 AP1M1Q9BXS5 423 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 ZWILCHQ9H900 591 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 MTMR4Q9NYA4 1195 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 DAPK2Q9UIK4 370 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 FNDC3AQ9Y2H6 1198 aaKnown RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 DDX3XO00571 662 aaKnown RBP eCLIP6.68□□□□□ -1.342e-9■■■■■ 46.6
VPS35-201ENST00000299138 SLC22A2O15244 555 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 GNAT1P11488 350 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 KRT76Q01546 638 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 SYCP2LQ5T4T6 812 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 SFR1Q86XK3 245 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 SIX6OS1Q8N1H7 587 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 ZNF555Q8NEP9 628 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 NKX2-3Q8TAU0 364 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 AGAP11Q8TF27 550 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 CATSPER2Q96P56 530 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 CNPY3Q9BT09 278 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 RERGLQ9H628 205 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 DBR1Q9UK59 544 aaKnown RBP6.68□□□□□ -1.34
VPS35-201ENST00000299138 PCDHB2Q9Y5E7 798 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 DUSP10Q9Y6W6 482 aa6.68□□□□□ -1.34
VPS35-201ENST00000299138 A0A0G2JLW4 131 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 PEX1O43933 1283 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 HSPA4LO95757 839 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 RECQLP46063 649 aaPredicted RBP6.67□□□□□ -1.34
VPS35-201ENST00000299138 RTP1P59025 263 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 TRIM32Q13049 653 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 CALML6Q8TD86 181 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 DEPDC1BQ8WUY9 529 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 C19orf60Q96EN9 201 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 CDHR1Q96JP9 859 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 IPO11Q9UI26 975 aaKnown RBP6.67□□□□□ -1.34
VPS35-201ENST00000299138 PCDHA1Q9Y5I3 950 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 NMT2O60551 498 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 NOL4O94818 638 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 ATP4AP20648 1035 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 STIP1P31948 543 aaKnown RBP6.67□□□□□ -1.34
VPS35-201ENST00000299138 SREBF1P36956 1147 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 ACAP1Q15027 740 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 SUSD4Q5VX71 490 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 ZFP1Q6P2D0 407 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 ASRGL1Q7L266 308 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 NET1Q7Z628 596 aaPredicted RBP6.67□□□□□ -1.34
VPS35-201ENST00000299138 FBXO11Q86XK2 927 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 KATNAL2Q8IYT4 538 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 TTC30BQ8N4P2 665 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 MCPH1Q8NEM0 835 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 SNX19Q92543 992 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms