RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 C21orf59P57076 290 aa15.33■□□□□ 0.05
PTPRA-201ENST00000216877 PDAP1Q13442 181 aaKnown RBP15.33■□□□□ 0.05
PTPRA-201ENST00000216877 ZBTB38Q8NAP3 1195 aaPredicted RBP15.33■□□□□ 0.05
PTPRA-201ENST00000216877 GABPB2Q8TAK5 448 aaPredicted RBP15.33■□□□□ 0.05
PTPRA-201ENST00000216877 DENND1AQ8TEH3 1009 aa15.33■□□□□ 0.05
PTPRA-201ENST00000216877 SREK1Q8WXA9 508 aaKnown RBP15.33■□□□□ 0.05
PTPRA-201ENST00000216877 FBXL8Q96CD0 374 aa15.33■□□□□ 0.05
PTPRA-201ENST00000216877 DNAJC19Q96DA6 116 aa15.33■□□□□ 0.05
PTPRA-201ENST00000216877 HERC5Q9UII4 1024 aaKnown RBP15.33■□□□□ 0.05
PTPRA-201ENST00000216877 CROTQ9UKG9 612 aa15.33■□□□□ 0.05
PTPRA-201ENST00000216877 LAMB2P55268 1798 aa15.33■□□□□ 0.04
PTPRA-201ENST00000216877 PI4K2BG5E9Z4 385 aa15.33■□□□□ 0.04
PTPRA-201ENST00000216877 CYTH3O43739 400 aa15.33■□□□□ 0.04
PTPRA-201ENST00000216877 SERPINB7O75635 380 aa15.33■□□□□ 0.04
PTPRA-201ENST00000216877 ZBTB11O95625 1053 aaPredicted RBP15.33■□□□□ 0.04
PTPRA-201ENST00000216877 RXRBP28702 533 aa15.33■□□□□ 0.04
PTPRA-201ENST00000216877 XKR5Q6UX68 686 aa15.33■□□□□ 0.04
PTPRA-201ENST00000216877 HPS6Q86YV9 775 aa15.33■□□□□ 0.04
PTPRA-201ENST00000216877 PPP1R10Q96QC0 940 aaKnown RBP15.33■□□□□ 0.04
PTPRA-201ENST00000216877 BCAS3Q9H6U6 928 aa15.33■□□□□ 0.04
PTPRA-201ENST00000216877 THSD7AQ9UPZ6 1657 aa15.33■□□□□ 0.04
PTPRA-201ENST00000216877 MAGEC1O60732 1142 aa15.33■□□□□ 0.04
PTPRA-201ENST00000216877 RALAP11233 206 aa15.33■□□□□ 0.04
PTPRA-201ENST00000216877 CD300CQ08708 224 aa15.33■□□□□ 0.04
PTPRA-201ENST00000216877 NRF1Q16656 503 aa15.33■□□□□ 0.04
PTPRA-201ENST00000216877 FRMD5Q7Z6J6 570 aa15.33■□□□□ 0.04
PTPRA-201ENST00000216877 PPM1KQ8N3J5 372 aa15.33■□□□□ 0.04
PTPRA-201ENST00000216877 SLC44A5Q8NCS7 719 aa15.33■□□□□ 0.04
PTPRA-201ENST00000216877 ZFRQ96KR1 1074 aaKnown RBP15.33■□□□□ 0.04
PTPRA-201ENST00000216877 ARPC5LQ9BPX5 153 aa15.33■□□□□ 0.04
PTPRA-201ENST00000216877 TUBA8Q9NY65 449 aaPredicted RBP15.33■□□□□ 0.04
PTPRA-201ENST00000216877 SENP1Q9P0U3 644 aa15.33■□□□□ 0.04
PTPRA-201ENST00000216877 SEC24DO94855 1032 aaPredicted RBP15.32■□□□□ 0.04
PTPRA-201ENST00000216877 TFDP1Q14186 410 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 DEFB107AQ8IZN7 70 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 SLC35C1Q96A29 364 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 DCUN1D1Q96GG9 259 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 SENP7Q9BQF6 1050 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 PALMDQ9NP74 551 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 MRGBPQ9NV56 204 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 FRMPD2Q68DX3 1309 aaPredicted RBP15.32■□□□□ 0.04
PTPRA-201ENST00000216877 SH3PXD2BA1X283 911 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 TOM1L1O75674 476 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 CD58P19256 250 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 CAV1Q03135 178 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 ITGADQ13349 1161 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 INAQ16352 499 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 EGFLAMQ63HQ2 1017 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 PLEKHA7Q6IQ23 1121 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 UGT2A3Q6UWM9 527 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 A0A1B0GTW7 788 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 FUOMA2VDF0 154 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 ARSEP51690 589 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 EIF6P56537 245 aaKnown RBP15.32■□□□□ 0.04
PTPRA-201ENST00000216877 ARPC4P59998 168 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 POTEHQ6S545 545 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 CROCCP3Q8IVE0 287 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 DDX25Q9UHL0 483 aaKnown RBP15.32■□□□□ 0.04
PTPRA-201ENST00000216877 SOX13Q9UN79 622 aa15.32■□□□□ 0.04
PTPRA-201ENST00000216877 E9PBE3 544 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 ADAM23O75077 832 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 ZC3H11AO75152 810 aaKnown RBP eCLIP15.31■□□□□ 0.041e-7■■□□□ 11.9
PTPRA-201ENST00000216877 CRKLP46109 303 aaKnown RBP15.31■□□□□ 0.04
PTPRA-201ENST00000216877 RAP1GDS1P52306 607 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 EPC2Q52LR7 807 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 SMUG1Q53HV7 270 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 ZCCHC23Q6ZST2 131 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 C3orf62Q6ZUJ4 267 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 BBS5Q8N3I7 341 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 INTS2Q9H0H0 1204 aaKnown RBP15.31■□□□□ 0.04
PTPRA-201ENST00000216877 COPS7BQ9H9Q2 264 aaPredicted RBP15.31■□□□□ 0.04
PTPRA-201ENST00000216877 SH3GLB2Q9NR46 395 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 K7EPI3 171 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 BUD23O43709 281 aaKnown RBP15.31■□□□□ 0.04
PTPRA-201ENST00000216877 RBP3P10745 1247 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 NR1H2P55055 460 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 ESRRGP62508 458 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 MYL7Q01449 175 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 VPS50Q96JG6 964 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 MRPS26Q9BYN8 205 aaKnown RBP15.31■□□□□ 0.04
PTPRA-201ENST00000216877 TNS2Q63HR2 1409 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 PRPF4O43172 522 aaKnown RBP eCLIP15.31■□□□□ 0.04
PTPRA-201ENST00000216877 SMIM18P0DKX4 95 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 TCN1P20061 433 aaPredicted RBP15.31■□□□□ 0.04
PTPRA-201ENST00000216877 IL6STP40189 918 aaPredicted RBP15.31■□□□□ 0.04
PTPRA-201ENST00000216877 TBC1D10BQ4KMP7 808 aaPredicted RBP15.31■□□□□ 0.04
PTPRA-201ENST00000216877 RARS2Q5T160 578 aaKnown RBP15.31■□□□□ 0.04
PTPRA-201ENST00000216877 BBOF1Q8ND07 529 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 SNX27Q96L92 541 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 WWP1Q9H0M0 922 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.31■□□□□ 0.044e-7■■□□□ 13.3
PTPRA-201ENST00000216877 FRMD4BQ9Y2L6 1034 aa15.31■□□□□ 0.04
PTPRA-201ENST00000216877 A8MU76 341 aa15.3■□□□□ 0.04
PTPRA-201ENST00000216877 SGK1O00141 431 aa15.3■□□□□ 0.04
PTPRA-201ENST00000216877 MRPS22P82650 360 aaKnown RBP15.3■□□□□ 0.04
PTPRA-201ENST00000216877 CARTPTQ16568 116 aa15.3■□□□□ 0.04
PTPRA-201ENST00000216877 TRIM16LQ309B1 348 aa15.3■□□□□ 0.04
PTPRA-201ENST00000216877 OGFOD1Q8N543 542 aa15.3■□□□□ 0.04
PTPRA-201ENST00000216877 MYCT1Q8N699 235 aa15.3■□□□□ 0.04
PTPRA-201ENST00000216877 SCAIQ8N9R8 606 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms