RNA–Protein interactions for RNA: YNL009W

IDP3, Transcript of Peroxisomal NADP-dependent isocitrate dehydrogenase, yeast

Gene IDP3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
IDP3	YNL009W	SCP1	Q08873	200 aa		4.97	□□□□□ -1.61
IDP3	YNL009W	KIN28	P06242	306 aa		4.96	□□□□□ -1.62
IDP3	YNL009W	URA5	P13298	226 aa	Known RBP	4.96	□□□□□ -1.62
IDP3	YNL009W	ICE2	P40499	491 aa		4.96	□□□□□ -1.62
IDP3	YNL009W	YIR035C	P40579	254 aa		4.96	□□□□□ -1.62
IDP3	YNL009W	GNA1	P43577	159 aa	Predicted RBP	4.96	□□□□□ -1.62
IDP3	YNL009W	HNT1	Q04344	158 aa	Known RBP	4.96	□□□□□ -1.62
IDP3	YNL009W	YPR145C-A	Q2V2P0	78 aa		4.96	□□□□□ -1.62
IDP3	YNL009W	Q0255	P03881	472 aa		4.95	□□□□□ -1.62
IDP3	YNL009W	ADK1	P07170	222 aa	Known RBP	4.95	□□□□□ -1.62
IDP3	YNL009W	ATG8	P38182	117 aa	RIP-Chip data	4.95	□□□□□ -1.62	not detected
IDP3	YNL009W	DGA1	Q08650	418 aa		4.95	□□□□□ -1.62
IDP3	YNL009W	RPB3	P16370	318 aa	Known RBP	4.94	□□□□□ -1.62
IDP3	YNL009W	VMA11	P32842	164 aa		4.94	□□□□□ -1.62
IDP3	YNL009W	APQ12	P40532	138 aa		4.94	□□□□□ -1.62
IDP3	YNL009W	NMA1	Q06178	401 aa	Known RBP	4.94	□□□□□ -1.62
IDP3	YNL009W	RPL9A	P05738	191 aa	Known RBP	4.93	□□□□□ -1.62
IDP3	YNL009W	UBI4	P0CG63	381 aa	Known RBP	4.93	□□□□□ -1.62
IDP3	YNL009W	RPL40A	P0CH08	128 aa	Known RBP	4.93	□□□□□ -1.62
IDP3	YNL009W	RPL40B	P0CH09	128 aa	Known RBP	4.93	□□□□□ -1.62
IDP3	YNL009W	YKL102C	P34249	101 aa		4.93	□□□□□ -1.62
IDP3	YNL009W	CPR5	P35176	225 aa		4.93	□□□□□ -1.62
IDP3	YNL009W	MID2	P36027	376 aa		4.93	□□□□□ -1.62
IDP3	YNL009W	YKR032W	P36127	104 aa		4.93	□□□□□ -1.62
IDP3	YNL009W	GIM4	P40005	111 aa	Known RBP	4.93	□□□□□ -1.62
IDP3	YNL009W	RFC2	P40348	353 aa		4.93	□□□□□ -1.62
IDP3	YNL009W	YIL059C	P40520	121 aa		4.93	□□□□□ -1.62
IDP3	YNL009W	EMC5	P40540	141 aa		4.93	□□□□□ -1.62
IDP3	YNL009W	SOL1	P50278	321 aa		4.93	□□□□□ -1.62
IDP3	YNL009W	RPL9B	P51401	191 aa	Known RBP	4.93	□□□□□ -1.62
IDP3	YNL009W	EMC4	P53073	190 aa		4.93	□□□□□ -1.62
IDP3	YNL009W	ERV14	P53173	138 aa		4.93	□□□□□ -1.62
IDP3	YNL009W	YGR042W	P53227	271 aa		4.93	□□□□□ -1.62
IDP3	YNL009W	APJ1	P53940	528 aa		4.93	□□□□□ -1.62
IDP3	YNL009W	YDR114C	Q04597	100 aa		4.93	□□□□□ -1.62
IDP3	YNL009W	MCP1	Q12106	302 aa		4.93	□□□□□ -1.62
IDP3	YNL009W	MPD1	Q12404	318 aa	Known RBP	4.93	□□□□□ -1.62
IDP3	YNL009W	SSS1	P35179	80 aa		4.92	□□□□□ -1.62
IDP3	YNL009W	SDH4	P37298	181 aa		4.92	□□□□□ -1.62
IDP3	YNL009W	MED6	P38782	295 aa		4.92	□□□□□ -1.62
IDP3	YNL009W	VMA21	P41806	77 aa		4.92	□□□□□ -1.62
IDP3	YNL009W	DAN1	P47178	298 aa		4.92	□□□□□ -1.62
IDP3	YNL009W	YGL204C	P53089	101 aa		4.92	□□□□□ -1.62
IDP3	YNL009W	YDC1	Q02896	317 aa		4.92	□□□□□ -1.62
IDP3	YNL009W	EST3	Q03096	181 aa		4.92	□□□□□ -1.62
IDP3	YNL009W	FIT1	Q04433	528 aa		4.92	□□□□□ -1.62
IDP3	YNL009W	YHR032W-A	P0C5N6	59 aa		4.91	□□□□□ -1.62
IDP3	YNL009W	SCM4	P32564	187 aa		4.91	□□□□□ -1.62
IDP3	YNL009W	CLB6	P32943	380 aa		4.91	□□□□□ -1.62
IDP3	YNL009W	PAN3	P36102	679 aa	Predicted RBP	4.91	□□□□□ -1.62
IDP3	YNL009W	SKI6	P46948	246 aa	Predicted RBP	4.91	□□□□□ -1.62
IDP3	YNL009W	RAD28	Q12021	506 aa		4.91	□□□□□ -1.62
IDP3	YNL009W	SEC59	P20048	519 aa		4.9	□□□□□ -1.63
IDP3	YNL009W	POP7	P38291	140 aa		4.9	□□□□□ -1.63
IDP3	YNL009W	DSK2	P48510	373 aa		4.9	□□□□□ -1.63
IDP3	YNL009W	MPA43	P53583	542 aa	Predicted RBP	4.9	□□□□□ -1.63
IDP3	YNL009W	HSK3	P69852	69 aa		4.9	□□□□□ -1.63
IDP3	YNL009W	YMR253C	Q04835	414 aa		4.9	□□□□□ -1.63
IDP3	YNL009W	YOR268C	Q08734	132 aa		4.9	□□□□□ -1.63
IDP3	YNL009W	FCF2	Q12035	217 aa	Predicted RBP	4.9	□□□□□ -1.63
IDP3	YNL009W	MSB2	P32334	1306 aa		4.9	□□□□□ -1.63
IDP3	YNL009W	MRPL44	P19956	98 aa		4.89	□□□□□ -1.63
IDP3	YNL009W	MDH3	P32419	343 aa	Known RBP RIP-Chip data	4.89	□□□□□ -1.63	not detected
IDP3	YNL009W	YBR013C	P38215	129 aa		4.89	□□□□□ -1.63
IDP3	YNL009W	YPT31	P38555	223 aa	Known RBP	4.89	□□□□□ -1.63
IDP3	YNL009W	BUD25	P85052	153 aa		4.89	□□□□□ -1.63
IDP3	YNL009W	YDR524C-B	Q3E6R4	66 aa		4.89	□□□□□ -1.63
IDP3	YNL009W	COX19	Q3E731	98 aa		4.89	□□□□□ -1.63
IDP3	YNL009W	TSC3	Q3E790	80 aa		4.89	□□□□□ -1.63
IDP3	YNL009W	YLR422W	Q06409	1932 aa		4.89	□□□□□ -1.63
IDP3	YNL009W	YCR023C	P25351	611 aa		4.88	□□□□□ -1.63
IDP3	YNL009W	FMT1	P32785	401 aa		4.88	□□□□□ -1.63
IDP3	YNL009W	SPC25	P40014	221 aa		4.88	□□□□□ -1.63
IDP3	YNL009W	PAU15	P40585	124 aa		4.88	□□□□□ -1.63
IDP3	YNL009W	GPI14	P47088	403 aa	Known RBP	4.88	□□□□□ -1.63
IDP3	YNL009W	CCC1	P47818	322 aa		4.88	□□□□□ -1.63
IDP3	YNL009W	SYM1	Q06563	197 aa		4.88	□□□□□ -1.63
IDP3	YNL009W	AKR2	Q12013	749 aa		4.88	□□□□□ -1.63
IDP3	YNL009W	ODC2	Q99297	307 aa		4.88	□□□□□ -1.63
IDP3	YNL009W	SCL1	P21243	252 aa	Known RBP	4.87	□□□□□ -1.63
IDP3	YNL009W	YNR062C	P53748	327 aa		4.87	□□□□□ -1.63
IDP3	YNL009W	CUE4	Q04201	117 aa	Predicted RBP	4.87	□□□□□ -1.63
IDP3	YNL009W	RRT7	Q07829	113 aa		4.87	□□□□□ -1.63
IDP3	YNL009W	YLR146W-A	Q2V2P1	62 aa		4.87	□□□□□ -1.63
IDP3	YNL009W	TIM12	P32830	109 aa		4.86	□□□□□ -1.63
IDP3	YNL009W	SNC2	P33328	115 aa		4.86	□□□□□ -1.63
IDP3	YNL009W	YOR062C	P36025	268 aa		4.86	□□□□□ -1.63
IDP3	YNL009W	DLS1	P40366	167 aa		4.86	□□□□□ -1.63
IDP3	YNL009W	TMA23	Q03525	211 aa		4.86	□□□□□ -1.63
IDP3	YNL009W	SEN15	Q04675	128 aa		4.86	□□□□□ -1.63
IDP3	YNL009W	YLR118C	Q12354	227 aa		4.86	□□□□□ -1.63
IDP3	YNL009W	FLX1	P40464	311 aa		4.85	□□□□□ -1.63
IDP3	YNL009W	YGL088W	P53151	121 aa		4.85	□□□□□ -1.63
IDP3	YNL009W	COA6	Q3E846	104 aa		4.85	□□□□□ -1.63
IDP3	YNL009W	MSW1	P04803	379 aa		4.84	□□□□□ -1.63
IDP3	YNL009W	RPS23A	P0CX29	145 aa	Known RBP	4.84	□□□□□ -1.63
IDP3	YNL009W	RPS23B	P0CX30	145 aa		4.84	□□□□□ -1.63
IDP3	YNL009W	OCH1	P31755	480 aa		4.84	□□□□□ -1.63
IDP3	YNL009W	SLM6	P38343	150 aa		4.84	□□□□□ -1.63
IDP3	YNL009W	TDA4	P47153	279 aa		4.84	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 63.4 ms