RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeastyeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIP1YMR309C YLR046CQ12253 270 aa-0.23□□□□□ -2.45
NIP1YMR309C UBR1P19812 1950 aa-0.23□□□□□ -2.45
NIP1YMR309C TMA20P89886 181 aaPredicted RBP-0.23□□□□□ -2.45
NIP1YMR309C EST3Q03096 181 aa-0.23□□□□□ -2.45
NIP1YMR309C YMR122CQ03879 124 aa-0.23□□□□□ -2.45
NIP1YMR309C GPI11Q06636 219 aa-0.23□□□□□ -2.45
NIP1YMR309C YET3Q07451 203 aa-0.23□□□□□ -2.45
NIP1YMR309C TY1B-HO13535 1793 aa-0.23□□□□□ -2.45
NIP1YMR309C NHP6AP11632 93 aaKnown RBP-0.24□□□□□ -2.45
NIP1YMR309C YKT6P36015 200 aaKnown RBP-0.24□□□□□ -2.45
NIP1YMR309C IPI1P38803 334 aaPredicted RBP-0.24□□□□□ -2.45
NIP1YMR309C THI74Q04083 370 aa-0.24□□□□□ -2.45
NIP1YMR309C HUT1Q12520 339 aa-0.24□□□□□ -2.45
NIP1YMR309C RIB3Q99258 208 aa-0.24□□□□□ -2.45
NIP1YMR309C YGL014C-AP0C5N1 53 aa-0.24□□□□□ -2.45
NIP1YMR309C YKR041WP36134 250 aa-0.24□□□□□ -2.45
NIP1YMR309C FIP1P45976 327 aa-0.24□□□□□ -2.45
NIP1YMR309C IRC19Q07843 230 aa-0.24□□□□□ -2.45
NIP1YMR309C URA2P07259 2214 aaKnown RBP-0.25□□□□□ -2.45
NIP1YMR309C LST8P41318 303 aa-0.25□□□□□ -2.45
NIP1YMR309C GPI2P46961 280 aa-0.25□□□□□ -2.45
NIP1YMR309C YGL193CP53097 103 aa-0.25□□□□□ -2.45
NIP1YMR309C YNL140CP53910 189 aa-0.25□□□□□ -2.45
NIP1YMR309C ATP19P81451 68 aa-0.25□□□□□ -2.45
NIP1YMR309C RFU1Q08003 200 aa-0.25□□□□□ -2.45
NIP1YMR309C SAC3P46674 1301 aa-0.25□□□□□ -2.45
NIP1YMR309C CMD1P06787 147 aaKnown RBP-0.25□□□□□ -2.45
NIP1YMR309C ANB1P19211 157 aa-0.25□□□□□ -2.45
NIP1YMR309C KTI11Q3E840 82 aa-0.25□□□□□ -2.45
NIP1YMR309C ATP5P09457 212 aa-0.26□□□□□ -2.45
NIP1YMR309C FUN14P18411 198 aa-0.26□□□□□ -2.45
NIP1YMR309C TRR1P29509 319 aaKnown RBP-0.26□□□□□ -2.45
NIP1YMR309C SRP14P38985 146 aa-0.26□□□□□ -2.45
NIP1YMR309C EMC4P53073 190 aa-0.26□□□□□ -2.45
NIP1YMR309C YNL019CP53975 284 aa-0.26□□□□□ -2.45
NIP1YMR309C YDR102CQ03864 110 aa-0.26□□□□□ -2.45
NIP1YMR309C COA4Q05809 96 aa-0.26□□□□□ -2.45
NIP1YMR309C RRT7Q07829 113 aa-0.26□□□□□ -2.45
NIP1YMR309C MHF1Q3E835 90 aa-0.26□□□□□ -2.45
NIP1YMR309C DDR48P18899 430 aaKnown RBP-0.26□□□□□ -2.45
NIP1YMR309C FES1P38260 290 aa-0.26□□□□□ -2.45
NIP1YMR309C DIE2P50076 525 aa-0.26□□□□□ -2.45
NIP1YMR309C CWC21Q03375 135 aaKnown RBP-0.26□□□□□ -2.45
NIP1YMR309C YLR194CQ05777 254 aa-0.26□□□□□ -2.45
NIP1YMR309C YDR010CQ12426 110 aa-0.26□□□□□ -2.45
NIP1YMR309C PFY1P07274 126 aa-0.27□□□□□ -2.45
NIP1YMR309C YHR213WP0CI67 198 aa-0.27□□□□□ -2.45
NIP1YMR309C MRPL31P14063 131 aaPredicted RBP-0.27□□□□□ -2.45
NIP1YMR309C APA2P22108 325 aa-0.27□□□□□ -2.45
NIP1YMR309C MRS4P23500 304 aa-0.27□□□□□ -2.45
NIP1YMR309C YBR013CP38215 129 aa-0.27□□□□□ -2.45
NIP1YMR309C YDR476CQ03362 224 aa-0.27□□□□□ -2.45
NIP1YMR309C YLR050CQ12155 161 aaKnown RBP-0.27□□□□□ -2.45
NIP1YMR309C NMT1P14743 455 aa-0.27□□□□□ -2.45
NIP1YMR309C SRP21P32342 167 aa-0.27□□□□□ -2.45
NIP1YMR309C MRPL24P36525 258 aaPredicted RBP-0.27□□□□□ -2.45
NIP1YMR309C POR2P40478 281 aa-0.27□□□□□ -2.45
NIP1YMR309C YJR128WP47162 119 aa-0.27□□□□□ -2.45
NIP1YMR309C YGL101WP53144 215 aa-0.27□□□□□ -2.45
NIP1YMR309C TAO3P40468 2376 aa-0.28□□□□□ -2.45
NIP1YMR309C RAD51P25454 400 aa-0.28□□□□□ -2.45
NIP1YMR309C ATP7P30902 174 aa-0.28□□□□□ -2.45
NIP1YMR309C SEC72P39742 193 aaKnown RBP-0.28□□□□□ -2.45
NIP1YMR309C VMA10P48836 114 aaKnown RBP-0.28□□□□□ -2.45
NIP1YMR309C MIC27P50945 234 aa-0.28□□□□□ -2.45
NIP1YMR309C AUA1P32450 94 aa-0.28□□□□□ -2.45
NIP1YMR309C LSM3P57743 89 aaKnown RBP-0.28□□□□□ -2.45
NIP1YMR309C HSK3P69852 69 aa-0.28□□□□□ -2.45
NIP1YMR309C TIM11P81449 96 aaPredicted RBP-0.28□□□□□ -2.45
NIP1YMR309C MAK3Q03503 176 aa-0.28□□□□□ -2.45
NIP1YMR309C GRE1Q08969 168 aa-0.28□□□□□ -2.45
NIP1YMR309C RPL30P14120 105 aaKnown RBP-0.29□□□□□ -2.46
NIP1YMR309C DLS1P40366 167 aa-0.29□□□□□ -2.46
NIP1YMR309C YPD1Q07688 167 aa-0.29□□□□□ -2.46
NIP1YMR309C MDN1Q12019 4910 aaKnown RBP-0.29□□□□□ -2.46
NIP1YMR309C COX5BP00425 151 aa-0.29□□□□□ -2.46
NIP1YMR309C RME1P32338 300 aaKnown RBP-0.29□□□□□ -2.46
NIP1YMR309C YFR035CP43608 114 aa-0.29□□□□□ -2.46
NIP1YMR309C ORM1P53224 222 aa-0.29□□□□□ -2.46
NIP1YMR309C RAF1Q06891 181 aa-0.29□□□□□ -2.46
NIP1YMR309C RDI1Q12434 202 aa-0.29□□□□□ -2.46
NIP1YMR309C SCS22Q6Q595 175 aa-0.29□□□□□ -2.46
NIP1YMR309C TY4B-HP0C2J7 1802 aa-0.3□□□□□ -2.46
NIP1YMR309C YSF3P0C074 85 aaPredicted RBP-0.3□□□□□ -2.46
NIP1YMR309C FYV5P25585 152 aa-0.3□□□□□ -2.46
NIP1YMR309C YER121WP40076 114 aa-0.3□□□□□ -2.46
NIP1YMR309C YIP3P53633 176 aa-0.3□□□□□ -2.46
NIP1YMR309C NAT5Q08689 176 aa-0.3□□□□□ -2.46
NIP1YMR309C ATP14Q12349 124 aa-0.3□□□□□ -2.46
NIP1YMR309C DDP1Q99321 188 aaKnown RBP-0.3□□□□□ -2.46
NIP1YMR309C JIP3O13555 125 aa-0.3□□□□□ -2.46
NIP1YMR309C RPL40AP0CH08 128 aaKnown RBP-0.3□□□□□ -2.46
NIP1YMR309C RPL40BP0CH09 128 aaKnown RBP-0.3□□□□□ -2.46
NIP1YMR309C EMP24P32803 203 aaKnown RBP-0.3□□□□□ -2.46
NIP1YMR309C VPS55P47111 140 aa-0.3□□□□□ -2.46
NIP1YMR309C GIM3P53900 129 aa-0.3□□□□□ -2.46
NIP1YMR309C MED11Q99278 115 aa-0.3□□□□□ -2.46
NIP1YMR309C BRR2P32639 2163 aaKnown RBP-0.31□□□□□ -2.46
NIP1YMR309C SEC16P48415 2195 aaKnown RBP-0.31□□□□□ -2.46
NIP1YMR309C UBI4P0CG63 381 aaKnown RBP-0.31□□□□□ -2.46
Retrieved 100 of 5,963 RNA–protein pairs in 52.6 ms