RNA–Protein interactions for RNA: YDR393W

SHE9, Transcript of Protein required for normal mitochondrial morphology, yeast

Gene SHE9, Length 1,371 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE9	YDR393W	LCL2	Q08045	131 aa		0.82	□□□□□ -2.28
SHE9	YDR393W	YOR214C	Q12282	236 aa		0.82	□□□□□ -2.28
SHE9	YDR393W	ATG40	Q99325	256 aa		0.82	□□□□□ -2.28
SHE9	YDR393W	RPS1B	P23248	255 aa	Known RBP	0.81	□□□□□ -2.28
SHE9	YDR393W	RPL24B	P24000	155 aa	Known RBP	0.81	□□□□□ -2.28
SHE9	YDR393W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	0.81	□□□□□ -2.28	not detected
SHE9	YDR393W	RGI1	P40043	161 aa	Predicted RBP	0.81	□□□□□ -2.28
SHE9	YDR393W	GCN20	P43535	752 aa	Known RBP	0.81	□□□□□ -2.28
SHE9	YDR393W	YFR035C	P43608	114 aa		0.81	□□□□□ -2.28
SHE9	YDR393W	CCC1	P47818	322 aa		0.81	□□□□□ -2.28
SHE9	YDR393W	MPC1	P53157	130 aa	Known RBP	0.81	□□□□□ -2.28
SHE9	YDR393W	YDR274C	P87283	123 aa		0.81	□□□□□ -2.28
SHE9	YDR393W	YMR007W	Q03675	126 aa		0.81	□□□□□ -2.28
SHE9	YDR393W	YHP1	Q04116	353 aa		0.81	□□□□□ -2.28
SHE9	YDR393W	RNH202	Q05635	350 aa		0.81	□□□□□ -2.28
SHE9	YDR393W	PRM3	Q08931	133 aa		0.81	□□□□□ -2.28
SHE9	YDR393W	YLR236C	A0A023PZG4	107 aa		0.8	□□□□□ -2.28
SHE9	YDR393W	RPC19	P28000	142 aa	Known RBP	0.8	□□□□□ -2.28
SHE9	YDR393W	VMA6	P32366	345 aa	Known RBP	0.8	□□□□□ -2.28
SHE9	YDR393W	APS1	P35181	156 aa		0.8	□□□□□ -2.28
SHE9	YDR393W	YBR285W	P38354	144 aa		0.8	□□□□□ -2.28
SHE9	YDR393W	YGL235W	P53071	178 aa		0.8	□□□□□ -2.28
SHE9	YDR393W	ALG13	P53178	202 aa		0.8	□□□□□ -2.28
SHE9	YDR393W	YPR127W	Q06494	345 aa		0.8	□□□□□ -2.28
SHE9	YDR393W	RPL28	P02406	149 aa	Known RBP	0.79	□□□□□ -2.28
SHE9	YDR393W	URA5	P13298	226 aa	Known RBP	0.79	□□□□□ -2.28
SHE9	YDR393W	STF2	P16965	84 aa		0.79	□□□□□ -2.28
SHE9	YDR393W	BET1	P22804	142 aa		0.79	□□□□□ -2.28
SHE9	YDR393W	UTP30	P36144	274 aa	Known RBP	0.79	□□□□□ -2.28
SHE9	YDR393W	ECM4	P36156	370 aa		0.79	□□□□□ -2.28
SHE9	YDR393W	MPC2	P38857	129 aa		0.79	□□□□□ -2.28
SHE9	YDR393W	MTW1	P39731	289 aa		0.79	□□□□□ -2.28
SHE9	YDR393W	YEL067C	P39978	195 aa		0.79	□□□□□ -2.28
SHE9	YDR393W	YER137C	P40083	148 aa	Known RBP	0.79	□□□□□ -2.28
SHE9	YDR393W	YGR201C	P42936	225 aa		0.79	□□□□□ -2.28
SHE9	YDR393W	RCF2	P53721	224 aa		0.79	□□□□□ -2.28
SHE9	YDR393W	RPL22B	P56628	122 aa	Known RBP	0.79	□□□□□ -2.28
SHE9	YDR393W	DIG2	Q03373	323 aa	Known RBP	0.79	□□□□□ -2.28
SHE9	YDR393W	DML1	Q03652	475 aa		0.79	□□□□□ -2.28
SHE9	YDR393W	AIM36	Q03798	255 aa		0.79	□□□□□ -2.28
SHE9	YDR393W	CUE4	Q04201	117 aa	Predicted RBP	0.79	□□□□□ -2.28
SHE9	YDR393W	YHR007C-A	Q07074	71 aa		0.79	□□□□□ -2.28
SHE9	YDR393W	IRC23	Q08416	157 aa		0.79	□□□□□ -2.28
SHE9	YDR393W	RAD28	Q12021	506 aa		0.79	□□□□□ -2.28
SHE9	YDR393W	SPC3	Q12133	184 aa		0.79	□□□□□ -2.28
SHE9	YDR393W	MPD1	Q12404	318 aa	Known RBP	0.79	□□□□□ -2.28
SHE9	YDR393W	TAR1	Q8TGM6	124 aa		0.79	□□□□□ -2.28
SHE9	YDR393W	RIB3	Q99258	208 aa		0.79	□□□□□ -2.28
SHE9	YDR393W	THP2	O13539	261 aa	Known RBP	0.78	□□□□□ -2.28
SHE9	YDR393W	SNF4	P12904	322 aa		0.78	□□□□□ -2.28
SHE9	YDR393W	RPL30	P14120	105 aa	Known RBP	0.78	□□□□□ -2.28
SHE9	YDR393W	YMR31	P19955	123 aa		0.78	□□□□□ -2.28
SHE9	YDR393W	ROX3	P25046	220 aa		0.78	□□□□□ -2.28
SHE9	YDR393W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	0.78	□□□□□ -2.28	not detected
SHE9	YDR393W	TCA17	P32613	152 aa		0.78	□□□□□ -2.28
SHE9	YDR393W	CBT1	P36038	271 aa	Predicted RBP	0.78	□□□□□ -2.28
SHE9	YDR393W	YER085C	P40058	173 aa		0.78	□□□□□ -2.28
SHE9	YDR393W	SMX2	P40204	77 aa	Known RBP	0.78	□□□□□ -2.28
SHE9	YDR393W	XPT1	P47165	209 aa		0.78	□□□□□ -2.28
SHE9	YDR393W	TTI2	P47168	421 aa		0.78	□□□□□ -2.28
SHE9	YDR393W	YPR013C	Q12145	317 aa		0.78	□□□□□ -2.28
SHE9	YDR393W	RPL25	P04456	142 aa	Known RBP	0.77	□□□□□ -2.29
SHE9	YDR393W	SEC11	P15367	167 aa		0.77	□□□□□ -2.29
SHE9	YDR393W	ANB1	P19211	157 aa		0.77	□□□□□ -2.29
SHE9	YDR393W	MIC12	P38341	106 aa		0.77	□□□□□ -2.29
SHE9	YDR393W	COX12	Q01519	83 aa		0.77	□□□□□ -2.29
SHE9	YDR393W	YKR005C	Q02203	525 aa		0.77	□□□□□ -2.29
SHE9	YDR393W	YOR192C-C	Q3E736	78 aa		0.77	□□□□□ -2.29
SHE9	YDR393W	MHF2	Q3E829	80 aa		0.77	□□□□□ -2.29
SHE9	YDR393W	YOS1	Q3E834	85 aa		0.77	□□□□□ -2.29
SHE9	YDR393W	GCN3	P14741	305 aa		0.76	□□□□□ -2.29
SHE9	YDR393W	YCR001W	P25347	104 aa		0.76	□□□□□ -2.29
SHE9	YDR393W	NUF2	P33895	451 aa		0.76	□□□□□ -2.29
SHE9	YDR393W	MRPL38	P35996	138 aa	Predicted RBP	0.76	□□□□□ -2.29
SHE9	YDR393W	PDX3	P38075	228 aa	Known RBP	0.76	□□□□□ -2.29
SHE9	YDR393W	ECM31	P38122	312 aa		0.76	□□□□□ -2.29
SHE9	YDR393W	RPS20	P38701	121 aa	Known RBP	0.76	□□□□□ -2.29
SHE9	YDR393W	ARO8	P53090	500 aa	Known RBP	0.76	□□□□□ -2.29
SHE9	YDR393W	YGR050C	P53231	118 aa		0.76	□□□□□ -2.29
SHE9	YDR393W	HHT1	P61830	136 aa		0.76	□□□□□ -2.29
SHE9	YDR393W	HSK3	P69852	69 aa		0.76	□□□□□ -2.29
SHE9	YDR393W	YPL067C	Q02754	198 aa		0.76	□□□□□ -2.29
SHE9	YDR393W	RFU1	Q08003	200 aa		0.76	□□□□□ -2.29
SHE9	YDR393W	KIN28	P06242	306 aa		0.75	□□□□□ -2.29
SHE9	YDR393W	YBR121C-A	P0C5L4	52 aa		0.75	□□□□□ -2.29
SHE9	YDR393W	AQY2	P0CD90	149 aa		0.75	□□□□□ -2.29
SHE9	YDR393W	RPB3	P16370	318 aa	Known RBP	0.75	□□□□□ -2.29
SHE9	YDR393W	SRP102	P36057	244 aa	Predicted RBP	0.75	□□□□□ -2.29
SHE9	YDR393W	FMP23	P38231	175 aa		0.75	□□□□□ -2.29
SHE9	YDR393W	IPT1	P38954	527 aa		0.75	□□□□□ -2.29
SHE9	YDR393W	MPM1	P40364	252 aa		0.75	□□□□□ -2.29
SHE9	YDR393W	HPM1	P40481	377 aa		0.75	□□□□□ -2.29
SHE9	YDR393W	YAE1	P47118	141 aa	Predicted RBP	0.75	□□□□□ -2.29
SHE9	YDR393W	RPL37B	P51402	88 aa	Known RBP	0.75	□□□□□ -2.29
SHE9	YDR393W	YGR025W	P53216	100 aa		0.75	□□□□□ -2.29
SHE9	YDR393W	NQM1	P53228	333 aa	Predicted RBP	0.75	□□□□□ -2.29
SHE9	YDR393W	PGA1	P53896	198 aa		0.75	□□□□□ -2.29
SHE9	YDR393W	UPS1	Q05776	175 aa		0.75	□□□□□ -2.29
SHE9	YDR393W	YOL118C	Q08259	102 aa		0.75	□□□□□ -2.29
SHE9	YDR393W	YFR032C-B	Q8TGU2	87 aa		0.75	□□□□□ -2.29

Retrieved 100 of 5,963 RNA–protein pairs in 42 ms