RNA–Protein interactions for RNA: YDR335W

MSN5, Transcript of Karyopherin, yeast

Gene MSN5, Length 3,675 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSN5	YDR335W	SLM2	P53955	656 aa		0.97	□□□□□ -2.25
MSN5	YDR335W	CWC27	Q02770	301 aa		0.97	□□□□□ -2.25
MSN5	YDR335W	PIR1	Q03178	341 aa		0.97	□□□□□ -2.25
MSN5	YDR335W	YBL112C	Q3E7Y4	105 aa		0.97	□□□□□ -2.25
MSN5	YDR335W	MOT1	P32333	1867 aa		0.97	□□□□□ -2.25
MSN5	YDR335W	MLP1	Q02455	1875 aa	Known RBP	0.97	□□□□□ -2.25
MSN5	YDR335W	MSB2	P32334	1306 aa		0.97	□□□□□ -2.25
MSN5	YDR335W	COX5B	P00425	151 aa		0.97	□□□□□ -2.25
MSN5	YDR335W	RPB3	P16370	318 aa	Known RBP	0.97	□□□□□ -2.25
MSN5	YDR335W	PHO85	P17157	305 aa		0.97	□□□□□ -2.25
MSN5	YDR335W	SEC59	P20048	519 aa		0.97	□□□□□ -2.25
MSN5	YDR335W	UGX2	P32772	223 aa		0.97	□□□□□ -2.25
MSN5	YDR335W	SDH4	P37298	181 aa		0.97	□□□□□ -2.25
MSN5	YDR335W	YFL019C	P43576	117 aa		0.97	□□□□□ -2.25
MSN5	YDR335W	YKR005C	Q02203	525 aa		0.97	□□□□□ -2.25
MSN5	YDR335W	SPG3	Q04398	127 aa	Predicted RBP	0.97	□□□□□ -2.25
MSN5	YDR335W	HCR1	Q05775	265 aa	Known RBP	0.97	□□□□□ -2.25
MSN5	YDR335W	YDR034W-B	Q6Q5X2	51 aa		0.97	□□□□□ -2.25
MSN5	YDR335W	GPA2	P10823	449 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	RPF1	P38805	295 aa	Known RBP	0.96	□□□□□ -2.26
MSN5	YDR335W	YER188W	P40103	239 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	MIC19	P43594	170 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	RDS3	Q06835	107 aa	Predicted RBP	0.96	□□□□□ -2.26
MSN5	YDR335W	RRT7	Q07829	113 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	YOR097C	Q12274	175 aa	Predicted RBP	0.96	□□□□□ -2.26
MSN5	YDR335W	ATO3	Q12359	275 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	DFM1	Q12743	341 aa	Known RBP	0.96	□□□□□ -2.26
MSN5	YDR335W	YLR099W-A	Q3E798	87 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	ADH1	P00330	348 aa	Known RBP	0.96	□□□□□ -2.26
MSN5	YDR335W	RPL40A	P0CH08	128 aa	Known RBP	0.96	□□□□□ -2.26
MSN5	YDR335W	RPL40B	P0CH09	128 aa	Known RBP	0.96	□□□□□ -2.26
MSN5	YDR335W	COX10	P21592	462 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	MDH2	P22133	377 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	SCM4	P32564	187 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	LHP1	P33399	275 aa	Known RBP	0.96	□□□□□ -2.26
MSN5	YDR335W	RNH202	Q05635	350 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	PIN3	Q06449	215 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	MCP1	Q12106	302 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	YOR304C-A	O14468	76 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	POR1	P04840	283 aa	Known RBP	0.96	□□□□□ -2.26
MSN5	YDR335W	YGL041W-A	P0C5N3	154 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	RPB5	P20434	215 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	ATP15	P21306	62 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	YBR242W	P38331	238 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	COS8	P38723	381 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	YEL067C	P39978	195 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	YEL028W	P39989	153 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	YIL152W	P40455	235 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	LIP1	Q03579	150 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	PPT2	Q12036	173 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	YER078W-A	Q3E7A2	54 aa		0.96	□□□□□ -2.26
MSN5	YDR335W	DDP1	Q99321	188 aa	Known RBP	0.96	□□□□□ -2.26
MSN5	YDR335W	NMT1	P14743	455 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	PEX4	P29340	183 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	YBL010C	P32788	280 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	YGL088W	P53151	121 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	YNR062C	P53748	327 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	MRPS8	Q03799	155 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	ATP14	Q12349	124 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	MRS4	P23500	304 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	PCL1	P24867	279 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	HYM1	P32464	399 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	UTH1	P36135	365 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	CTR2	P38865	189 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	AIM18	P38884	321 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	KRE9	P39005	276 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	NSA2	P40078	261 aa	Known RBP	0.95	□□□□□ -2.26
MSN5	YDR335W	YER134C	P40081	178 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	TVP15	Q03860	143 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	YPR195C	Q06594	109 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	FYV7	Q12247	151 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	MSW1	P04803	379 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	RPL9A	P05738	191 aa	Known RBP	0.95	□□□□□ -2.26
MSN5	YDR335W	RPS19A	P07280	144 aa	Known RBP	0.95	□□□□□ -2.26
MSN5	YDR335W	RPS19B	P07281	144 aa	Predicted RBP	0.95	□□□□□ -2.26
MSN5	YDR335W	RPB9	P27999	122 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	MRP49	P32388	137 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	IRC22	P40006	225 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	VTC1	P40046	129 aa	RIP-Chip data	0.95	□□□□□ -2.26	not detected
MSN5	YDR335W	PHS1	P40857	217 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	YFR035C	P43608	114 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	RPL9B	P51401	191 aa	Known RBP	0.95	□□□□□ -2.26
MSN5	YDR335W	MPC1	P53157	130 aa	Known RBP	0.95	□□□□□ -2.26
MSN5	YDR335W	NKP2	Q06162	153 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	TIR4	Q12218	487 aa	Predicted RBP	0.95	□□□□□ -2.26
MSN5	YDR335W	YPL247C	Q12523	523 aa		0.95	□□□□□ -2.26
MSN5	YDR335W	RAS2	P01120	322 aa	Known RBP	0.94	□□□□□ -2.26
MSN5	YDR335W	CBP6	P07253	162 aa	Predicted RBP	0.94	□□□□□ -2.26
MSN5	YDR335W	FZF1	P32805	299 aa		0.94	□□□□□ -2.26
MSN5	YDR335W	SHB17	P36136	271 aa	Known RBP	0.94	□□□□□ -2.26
MSN5	YDR335W	YEA6	P39953	335 aa		0.94	□□□□□ -2.26
MSN5	YDR335W	RPA43	P46669	326 aa		0.94	□□□□□ -2.26
MSN5	YDR335W	YLR281C	Q05863	155 aa		0.94	□□□□□ -2.26
MSN5	YDR335W	SAS5	Q99314	248 aa		0.94	□□□□□ -2.26
MSN5	YDR335W	ASK1	P35734	292 aa		0.94	□□□□□ -2.26
MSN5	YDR335W	SPC25	P40014	221 aa		0.94	□□□□□ -2.26
MSN5	YDR335W	GNA1	P43577	159 aa	Predicted RBP	0.94	□□□□□ -2.26
MSN5	YDR335W	YGR026W	P53217	278 aa		0.94	□□□□□ -2.26
MSN5	YDR335W	ECM19	Q06011	112 aa		0.94	□□□□□ -2.26
MSN5	YDR335W	SYM1	Q06563	197 aa		0.94	□□□□□ -2.26

Retrieved 100 of 5,963 RNA–protein pairs in 23.3 ms