RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W YKL102CP34249 101 aa0.74□□□□□ -2.29
CDC39YCR093W BAT2P47176 376 aaKnown RBP0.74□□□□□ -2.29
CDC39YCR093W HHO1P53551 258 aa0.74□□□□□ -2.29
CDC39YCR093W DAD4P69851 72 aa0.74□□□□□ -2.29
CDC39YCR093W PKR1Q03880 122 aaKnown RBP0.74□□□□□ -2.29
CDC39YCR093W YDL157CQ12082 118 aa0.74□□□□□ -2.29
CDC39YCR093W BEM2P39960 2167 aaKnown RBP0.74□□□□□ -2.29
CDC39YCR093W POR1P04840 283 aaKnown RBP0.74□□□□□ -2.29
CDC39YCR093W CNB1P25296 175 aa0.74□□□□□ -2.29
CDC39YCR093W KDX1P36005 433 aa0.74□□□□□ -2.29
CDC39YCR093W APQ12P40532 138 aa0.74□□□□□ -2.29
CDC39YCR093W POP3P53833 195 aaPredicted RBP0.74□□□□□ -2.29
CDC39YCR093W DDI2P0CH63 225 aa0.74□□□□□ -2.29
CDC39YCR093W DDI3P0CH64 225 aa0.74□□□□□ -2.29
CDC39YCR093W FPR1P20081 114 aaKnown RBP0.74□□□□□ -2.29
CDC39YCR093W YKR005CQ02203 525 aa0.74□□□□□ -2.29
CDC39YCR093W PRP11Q07350 266 aaPredicted RBP0.74□□□□□ -2.29
CDC39YCR093W MSA1Q08471 629 aa0.74□□□□□ -2.29
CDC39YCR093W FYV12Q08559 129 aa0.74□□□□□ -2.29
CDC39YCR093W YOR015WQ12169 119 aa0.74□□□□□ -2.29
CDC39YCR093W QCR8P08525 94 aa0.74□□□□□ -2.29
CDC39YCR093W BOL2P53082 120 aa0.74□□□□□ -2.29
CDC39YCR093W YGL101WP53144 215 aa0.74□□□□□ -2.29
CDC39YCR093W GEP7P53171 287 aa0.74□□□□□ -2.29
CDC39YCR093W PET191Q02772 108 aa0.74□□□□□ -2.29
CDC39YCR093W YPR013CQ12145 317 aa0.74□□□□□ -2.29
CDC39YCR093W FCY1Q12178 158 aa0.74□□□□□ -2.29
CDC39YCR093W EFG1Q3E705 233 aaKnown RBP0.74□□□□□ -2.29
CDC39YCR093W GRX2P17695 143 aaKnown RBP0.74□□□□□ -2.29
CDC39YCR093W HYP2P23301 157 aaKnown RBP0.74□□□□□ -2.29
CDC39YCR093W YGL010WP25338 174 aa0.74□□□□□ -2.29
CDC39YCR093W YHL042WP38729 150 aa0.74□□□□□ -2.29
CDC39YCR093W NQM1P53228 333 aaPredicted RBP0.74□□□□□ -2.29
CDC39YCR093W CWC27Q02770 301 aa0.74□□□□□ -2.29
CDC39YCR093W JIP3O13555 125 aa0.73□□□□□ -2.29
CDC39YCR093W VMA10P48836 114 aaKnown RBP0.73□□□□□ -2.29
CDC39YCR093W YNL146C-AQ3E7Z1 64 aa0.73□□□□□ -2.29
CDC39YCR093W FMP27Q06179 2628 aa0.73□□□□□ -2.29
CDC39YCR093W YLR236CA0A023PZG4 107 aa0.73□□□□□ -2.29
CDC39YCR093W YLR460CP54007 376 aa0.73□□□□□ -2.29
CDC39YCR093W KTI11Q3E840 82 aa0.73□□□□□ -2.29
CDC39YCR093W TOR1P35169 2470 aa0.73□□□□□ -2.29
CDC39YCR093W YDR157WA0A023PZE8 133 aa0.73□□□□□ -2.29
CDC39YCR093W MRPL44P19956 98 aa0.73□□□□□ -2.29
CDC39YCR093W UBC8P28263 218 aa0.73□□□□□ -2.29
CDC39YCR093W AHT1P29589 182 aa0.73□□□□□ -2.29
CDC39YCR093W SPC25P40014 221 aa0.73□□□□□ -2.29
CDC39YCR093W ERG10P41338 398 aaKnown RBP0.73□□□□□ -2.29
CDC39YCR093W YOL014WQ08110 124 aa0.73□□□□□ -2.29
CDC39YCR093W UTP30P36144 274 aaKnown RBP0.73□□□□□ -2.29
CDC39YCR093W POP7P38291 140 aa0.73□□□□□ -2.29
CDC39YCR093W GIM4P40005 111 aaKnown RBP0.73□□□□□ -2.29
CDC39YCR093W LSM1P47017 172 aaKnown RBP0.73□□□□□ -2.29
CDC39YCR093W YAE1P47118 141 aaPredicted RBP0.73□□□□□ -2.29
CDC39YCR093W YGL235WP53071 178 aa0.73□□□□□ -2.29
CDC39YCR093W DAS2Q12084 232 aa0.73□□□□□ -2.29
CDC39YCR093W SEN2P16658 377 aa0.73□□□□□ -2.29
CDC39YCR093W YBR219CP38317 127 aa0.73□□□□□ -2.29
CDC39YCR093W YER084WP40057 128 aa0.73□□□□□ -2.29
CDC39YCR093W CCC1P47818 322 aa0.73□□□□□ -2.29
CDC39YCR093W YMR253CQ04835 414 aa0.73□□□□□ -2.29
CDC39YCR093W YOR072WQ08486 104 aa0.73□□□□□ -2.29
CDC39YCR093W AME1P38313 324 aa0.72□□□□□ -2.29
CDC39YCR093W YIL102CP40488 101 aa0.72□□□□□ -2.29
CDC39YCR093W GPI2P46961 280 aa0.72□□□□□ -2.29
CDC39YCR093W LSM3P57743 89 aaKnown RBP0.72□□□□□ -2.29
CDC39YCR093W SNO1Q03144 224 aa0.72□□□□□ -2.29
CDC39YCR093W RAF1Q06891 181 aa0.72□□□□□ -2.29
CDC39YCR093W FLX1P40464 311 aa0.72□□□□□ -2.29
CDC39YCR093W PIR5P46999 287 aa0.72□□□□□ -2.29
CDC39YCR093W RDI1Q12434 202 aa0.72□□□□□ -2.29
CDC39YCR093W ATP5P09457 212 aa0.72□□□□□ -2.29
CDC39YCR093W NMT1P14743 455 aa0.72□□□□□ -2.29
CDC39YCR093W FUN14P18411 198 aa0.72□□□□□ -2.29
CDC39YCR093W HYR1P40581 163 aaKnown RBP0.72□□□□□ -2.29
CDC39YCR093W CIN5P40917 295 aa0.72□□□□□ -2.29
CDC39YCR093W DAN1P47178 298 aa0.72□□□□□ -2.29
CDC39YCR093W MLP1Q02455 1875 aaKnown RBP0.72□□□□□ -2.29
CDC39YCR093W THI74Q04083 370 aa0.72□□□□□ -2.29
CDC39YCR093W PDR18P53756 1333 aa0.72□□□□□ -2.29
CDC39YCR093W STF2P16965 84 aa0.72□□□□□ -2.29
CDC39YCR093W APA2P22108 325 aa0.72□□□□□ -2.29
CDC39YCR093W MAK31P23059 88 aa0.72□□□□□ -2.29
CDC39YCR093W PEX34P25584 144 aa0.72□□□□□ -2.29
CDC39YCR093W PHB1P40961 287 aa0.72□□□□□ -2.29
CDC39YCR093W YJR015WP47090 510 aa0.72□□□□□ -2.29
CDC39YCR093W RBL2P48606 106 aaKnown RBP0.72□□□□□ -2.29
CDC39YCR093W ATG10Q07879 167 aa0.72□□□□□ -2.29
CDC39YCR093W YHR214C-EQ8TGK0 99 aa0.72□□□□□ -2.29
CDC39YCR093W YFR032C-BQ8TGU2 87 aa0.72□□□□□ -2.29
CDC39YCR093W RPB7P34087 171 aa0.72□□□□□ -2.29
CDC39YCR093W NAT5Q08689 176 aa0.72□□□□□ -2.29
CDC39YCR093W COA6Q3E846 104 aa0.72□□□□□ -2.29
CDC39YCR093W RPL35AP0CX84 120 aaKnown RBP0.71□□□□□ -2.3
CDC39YCR093W RPL35BP0CX85 120 aaKnown RBP0.71□□□□□ -2.3
CDC39YCR093W SHB17P36136 271 aaKnown RBP0.71□□□□□ -2.3
CDC39YCR093W YBR220CP38318 560 aa0.71□□□□□ -2.3
CDC39YCR093W TTI2P47168 421 aa0.71□□□□□ -2.3
CDC39YCR093W YJR146WP47174 117 aa0.71□□□□□ -2.3
CDC39YCR093W IRC23Q08416 157 aa0.71□□□□□ -2.3
Retrieved 100 of 5,963 RNA–protein pairs in 6.1 ms