RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 DCAF17Q5H9S7 520 aaPredicted RBP10.55□□□□□ -0.72
CLN3-261ENST00000637686 LIMS2Q7Z4I7 341 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 GRASPQ7Z6J2 395 aaPredicted RBP10.55□□□□□ -0.72
CLN3-261ENST00000637686 TCEAL8Q8IYN2 117 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 SPATA18Q8TC71 538 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 KBTBD7Q8WVZ9 684 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 ACBD6Q9BR61 282 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 MRPL45Q9BRJ2 306 aaKnown RBP10.55□□□□□ -0.72
CLN3-261ENST00000637686 WDR6Q9NNW5 1121 aaKnown RBP10.55□□□□□ -0.72
CLN3-261ENST00000637686 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.55□□□□□ -0.72
CLN3-261ENST00000637686 TMLHEQ9NVH6 421 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 SLC27A5Q9Y2P5 690 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 DAAM1Q9Y4D1 1078 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 INSL5Q9Y5Q6 135 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 ITIH6Q6UXX5 1313 aa10.55□□□□□ -0.72
CLN3-261ENST00000637686 C2CD4DB7Z1M9 353 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 TNFRSF10AO00220 468 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 STX10O60499 249 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 N4BP1O75113 896 aaKnown RBP10.54□□□□□ -0.72
CLN3-261ENST00000637686 TACC1O75410 805 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 ADCY5O95622 1261 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 POU2F2P09086 479 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 PDGFRBP09619 1106 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 WARSP23381 471 aaKnown RBP10.54□□□□□ -0.72
CLN3-261ENST00000637686 LMO2P25791 158 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 MTIF2P46199 727 aaKnown RBP10.54□□□□□ -0.72
CLN3-261ENST00000637686 CDH8P55286 799 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 NTHL1P78549 312 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 TSPY1Q01534 308 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 CCDC173Q0VFZ6 552 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 SGSM1Q2NKQ1 1148 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 VWA3BQ502W6 1294 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 ZNF667Q5HYK9 610 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 INTS6LQ5JSJ4 861 aaKnown RBP10.54□□□□□ -0.72
CLN3-261ENST00000637686 MIIPQ5JXC2 388 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 TCERG1LQ5VWI1 586 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 SPOPLQ6IQ16 392 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 DCP1BQ8IZD4 617 aaKnown RBP10.54□□□□□ -0.72
CLN3-261ENST00000637686 TTC9BQ8N6N2 239 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 OR6B3Q8NGW1 331 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 TAS1R2Q8TE23 839 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 ERGIC2Q96RQ1 377 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 PPP1R9BQ96SB3 815 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 PI4K2AQ9BTU6 479 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 XPO4Q9C0E2 1151 aaKnown RBP10.54□□□□□ -0.72
CLN3-261ENST00000637686 SNX25Q9H3E2 840 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 SMYD3Q9H7B4 428 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 VRTNQ9H8Y1 702 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 TMEM8AQ9HCN3 771 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 HCFC1R1Q9NWW0 138 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 IFNKQ9P0W0 207 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 DNMT3BQ9UBC3 853 aaKnown RBP10.54□□□□□ -0.72
CLN3-261ENST00000637686 NR2E1Q9Y466 385 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 YIPF1Q9Y548 306 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.54□□□□□ -0.72
CLN3-261ENST00000637686 CLUHO75153 1309 aa10.54□□□□□ -0.72
CLN3-261ENST00000637686 AP5Z1O43299 807 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 ATP2C2O75185 946 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 LRRN2O75325 713 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 SOAT2O75908 522 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 ASS1P00966 412 aaKnown RBP10.53□□□□□ -0.72
CLN3-261ENST00000637686 AFPP02771 609 aaKnown RBP10.53□□□□□ -0.72
CLN3-261ENST00000637686 FAM163BP0C2L3 166 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 FSHRP23945 695 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 PCSK1P29120 753 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 GNL1P36915 607 aaPredicted RBP10.53□□□□□ -0.72
CLN3-261ENST00000637686 PBX1P40424 430 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 RAP1GAPP47736 663 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 ALDH1A3P47895 512 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 PSMC1P62191 440 aaKnown RBP10.53□□□□□ -0.72
CLN3-261ENST00000637686 SMARCB1Q12824 385 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 CCDC142Q17RM4 750 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 MGAT5BQ3V5L5 792 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 CBWD6Q4V339 395 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 FIGNQ5HY92 759 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 CBWD3Q5JTY5 395 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 CBWD5Q5RIA9 395 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 FKBP15Q5T1M5 1219 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 KRT39Q6A163 491 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 SCARA5Q6ZMJ2 495 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 GET4Q7L5D6 327 aaPredicted RBP10.53□□□□□ -0.72
CLN3-261ENST00000637686 OTOP3Q7RTS5 596 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 RNF135Q8IUD6 432 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 VSTM4Q8IW00 320 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 TDRD5Q8NAT2 981 aaKnown RBP10.53□□□□□ -0.72
CLN3-261ENST00000637686 C2orf15Q8WU43 125 aaKnown RBP10.53□□□□□ -0.72
CLN3-261ENST00000637686 TAF4BQ92750 862 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 SEMA4DQ92854 862 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 KHSRPQ92945 711 aaKnown RBP eCLIP10.53□□□□□ -0.72
CLN3-261ENST00000637686 SLC35C1Q96A29 364 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 SEPT5Q99719 369 aaPredicted RBP10.53□□□□□ -0.72
CLN3-261ENST00000637686 SYT15Q9BQS2 421 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 CORO1BQ9BR76 489 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 SDCBP2Q9H190 292 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 NDST4Q9H3R1 872 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 APOBEC3GQ9HC16 384 aaKnown RBP10.53□□□□□ -0.72
CLN3-261ENST00000637686 ABI2Q9NYB9 513 aaPredicted RBP10.53□□□□□ -0.72
CLN3-261ENST00000637686 CEP72Q9P209 647 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 IMPACTQ9P2X3 320 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 GTF3C4Q9UKN8 822 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms