RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 AP5M1Q9H0R1 490 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 GJD2Q9UKL4 321 aa16.53■□□□□ 0.24
CLN3-251ENST00000636853 BARX2Q9UMQ3 279 aaPredicted RBP16.53■□□□□ 0.24
CLN3-251ENST00000636853 HAS3O00219 553 aa16.52■□□□□ 0.24
CLN3-251ENST00000636853 KRT1P04264 644 aa16.52■□□□□ 0.24
CLN3-251ENST00000636853 KRT3P12035 628 aa16.52■□□□□ 0.24
CLN3-251ENST00000636853 AKAP5P24588 427 aa16.52■□□□□ 0.24
CLN3-251ENST00000636853 RGS2P41220 211 aa16.52■□□□□ 0.24
CLN3-251ENST00000636853 CPT1AP50416 773 aa16.52■□□□□ 0.24
CLN3-251ENST00000636853 ADAM17P78536 824 aa16.52■□□□□ 0.24
CLN3-251ENST00000636853 CDC42EP1Q00587 391 aa16.52■□□□□ 0.24
CLN3-251ENST00000636853 NFX1Q12986 1120 aaKnown RBP16.52■□□□□ 0.24
CLN3-251ENST00000636853 PIGHQ14442 188 aaPredicted RBP16.52■□□□□ 0.24
CLN3-251ENST00000636853 TRIP13Q15645 432 aaPredicted RBP16.52■□□□□ 0.24
CLN3-251ENST00000636853 RGMBQ6NW40 437 aa16.52■□□□□ 0.24
CLN3-251ENST00000636853 SAPCD2Q86UD0 394 aa16.52■□□□□ 0.24
CLN3-251ENST00000636853 SLCO2A1Q92959 643 aa16.52■□□□□ 0.24
CLN3-251ENST00000636853 CCDC114Q96M63 670 aa16.52■□□□□ 0.24
CLN3-251ENST00000636853 TRIM6Q9C030 488 aaPredicted RBP16.52■□□□□ 0.24
CLN3-251ENST00000636853 TMBIM4Q9HC24 238 aa16.52■□□□□ 0.24
CLN3-251ENST00000636853 SIGLEC16A6NMB1 481 aa16.52■□□□□ 0.23
CLN3-251ENST00000636853 VGLL3A8MV65 326 aa16.52■□□□□ 0.23
CLN3-251ENST00000636853 VDRP11473 427 aa16.52■□□□□ 0.23
CLN3-251ENST00000636853 INCA1Q0VD86 236 aa16.52■□□□□ 0.23
CLN3-251ENST00000636853 CHADLQ6NUI6 762 aa16.52■□□□□ 0.23
CLN3-251ENST00000636853 MFSD7Q6UXD7 560 aa16.52■□□□□ 0.23
CLN3-251ENST00000636853 XYLT1Q86Y38 959 aa16.52■□□□□ 0.23
CLN3-251ENST00000636853 EMC1Q8N766 993 aa16.52■□□□□ 0.23
CLN3-251ENST00000636853 C12orf29Q8N999 325 aa16.52■□□□□ 0.23
CLN3-251ENST00000636853 SLITRK1Q96PX8 696 aa16.52■□□□□ 0.23
CLN3-251ENST00000636853 PLEKHA5Q9HAU0 1116 aa16.52■□□□□ 0.23
CLN3-251ENST00000636853 LRRC4CQ9HCJ2 640 aa16.52■□□□□ 0.23
CLN3-251ENST00000636853 METTL5Q9NRN9 209 aaKnown RBP16.52■□□□□ 0.23
CLN3-251ENST00000636853 PARP2Q9UGN5 583 aa16.52■□□□□ 0.23
CLN3-251ENST00000636853 ASIC3Q9UHC3 531 aa16.52■□□□□ 0.23
CLN3-251ENST00000636853 RRP15Q9Y3B9 282 aaKnown RBP16.52■□□□□ 0.23
CLN3-251ENST00000636853 PIK3R2O00459 728 aa16.51■□□□□ 0.23
CLN3-251ENST00000636853 TNPO2O14787 897 aaKnown RBP16.51■□□□□ 0.23
CLN3-251ENST00000636853 RECQL4O94761 1208 aa16.51■□□□□ 0.23
CLN3-251ENST00000636853 ATF7P17544 494 aaPredicted RBP16.51■□□□□ 0.23
CLN3-251ENST00000636853 CYP3A5P20815 502 aa16.51■□□□□ 0.23
CLN3-251ENST00000636853 PSMA2P25787 234 aa16.51■□□□□ 0.23
CLN3-251ENST00000636853 PMS2P54278 862 aa16.51■□□□□ 0.23
CLN3-251ENST00000636853 YARSP54577 528 aaKnown RBP16.51■□□□□ 0.23
CLN3-251ENST00000636853 MYO1EQ12965 1108 aa16.51■□□□□ 0.23
CLN3-251ENST00000636853 IRF5Q13568 498 aa16.51■□□□□ 0.23
CLN3-251ENST00000636853 SNX17Q15036 470 aa16.51■□□□□ 0.23
CLN3-251ENST00000636853 CNGA2Q16280 664 aa16.51■□□□□ 0.23
CLN3-251ENST00000636853 APBB1IPQ7Z5R6 666 aaPredicted RBP16.51■□□□□ 0.23
CLN3-251ENST00000636853 RCOR2Q8IZ40 523 aa16.51■□□□□ 0.23
CLN3-251ENST00000636853 RAPGEF5Q92565 580 aa16.51■□□□□ 0.23
CLN3-251ENST00000636853 ART4Q93070 314 aa16.51■□□□□ 0.23
CLN3-251ENST00000636853 ATP6V1G3Q96LB4 118 aa16.51■□□□□ 0.23
CLN3-251ENST00000636853 MRPL45Q9BRJ2 306 aaKnown RBP16.51■□□□□ 0.23
CLN3-251ENST00000636853 EPB41L4BQ9H329 900 aa16.51■□□□□ 0.23
CLN3-251ENST00000636853 PIN4Q9Y237 131 aaKnown RBP16.51■□□□□ 0.23
CLN3-251ENST00000636853 SNX9Q9Y5X1 595 aa16.51■□□□□ 0.23
CLN3-251ENST00000636853 DNAH12Q6ZR08 3092 aa16.51■□□□□ 0.23
CLN3-251ENST00000636853 GOLGA6L10A6NI86 522 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 STAU1O95793 577 aaKnown RBP16.5■□□□□ 0.23
CLN3-251ENST00000636853 MYZAPP0CAP1 466 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 CTGFP29279 349 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 GBP1P32455 592 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 GPD2P43304 727 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 PDCLQ13371 301 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 TTC19Q6DKK2 380 aaPredicted RBP16.5■□□□□ 0.23
CLN3-251ENST00000636853 SMYD5Q6GMV2 418 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 NIPA2Q8N8Q9 360 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 APBA2Q99767 749 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 KLK14Q9P0G3 267 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 MTRF1LQ9UGC7 380 aaKnown RBP16.5■□□□□ 0.23
CLN3-251ENST00000636853 RALGAPA2Q2PPJ7 1873 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 HMGCRP04035 888 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 VPS41P49754 854 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 ATP1A2P50993 1020 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 CRHR2Q13324 411 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 ZBTB6Q15916 424 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 CCNG2Q16589 344 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 FSCN1Q16658 493 aaKnown RBP16.5■□□□□ 0.23
CLN3-251ENST00000636853 SKIDA1Q1XH10 827 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 ODF2Q5BJF6 829 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 UBAP2Q5T6F2 1119 aaKnown RBP16.5■□□□□ 0.23
CLN3-251ENST00000636853 LRRC38Q5VT99 294 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 ARFGAP1Q8N6T3 406 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 ATL2Q8NHH9 583 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 RBM41Q96IZ5 413 aaKnown RBP16.5■□□□□ 0.23
CLN3-251ENST00000636853 NT5C1AQ9BXI3 368 aa16.5■□□□□ 0.23
CLN3-251ENST00000636853 MYADML2A6NDP7 307 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 TP73O15350 636 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 CETN2P41208 172 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 CALCOCO2Q13137 446 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 SMTNL2Q2TAL5 461 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 SPOCD1Q6ZMY3 1216 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 GRK7Q8WTQ7 553 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 ZWILCHQ9H900 591 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 ZFYVE28Q9HCC9 887 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 BCCIPQ9P287 314 aaKnown RBP eCLIP16.49■□□□□ 0.23
CLN3-251ENST00000636853 LCMT1Q9UIC8 334 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 TSPAN16Q9UKR8 245 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 DERAQ9Y315 318 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms