RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 TRPA1O75762 1119 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 PAPOLAP51003 745 aaKnown RBP13.2□□□□□ -0.3
LIG1-221ENST00000613670 GPC3P51654 580 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 NLRP11P59045 1033 aaKnown RBP13.2□□□□□ -0.3
LIG1-221ENST00000613670 CYP1B1Q16678 543 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.2□□□□□ -0.3
LIG1-221ENST00000613670 ISLR2Q6UXK2 745 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 ZNF677Q86XU0 584 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 ZBTB8OSQ8IWT0 167 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 RFWD2Q8NHY2 731 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 PIP4K2CQ8TBX8 421 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 TMC2Q8TDI7 906 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 ZNF606Q8WXB4 792 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 L3MBTL3Q96JM7 780 aaPredicted RBP13.2□□□□□ -0.3
LIG1-221ENST00000613670 CCDC134Q9H6E4 229 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 PRM3Q9NNZ6 103 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 DDX56Q9NY93 547 aaKnown RBP13.2□□□□□ -0.3
LIG1-221ENST00000613670 SLC17A7Q9P2U7 560 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 ZC3H7BQ9UGR2 993 aaKnown RBP13.2□□□□□ -0.3
LIG1-221ENST00000613670 FBXO40Q9UH90 709 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 COL18A1P39060 1754 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 hCG_2014768A0A024R1R8 64 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 FCHO1O14526 889 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 NR3C2P08235 984 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 GTF2BQ00403 316 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 SNRNP48Q6IEG0 339 aaKnown RBP13.2□□□□□ -0.3
LIG1-221ENST00000613670 BTBD10Q9BSF8 475 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 KCNG1Q9UIX4 513 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 MYH1P12882 1939 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 MYH4Q9Y623 1939 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 LIASO43766 372 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 EXTL3O43909 919 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 KRT38O76015 456 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 CACNA2D1P54289 1103 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 GCNT1Q02742 428 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 WDR72Q3MJ13 1102 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 WASHC2DQ5SRD0 308 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 ATXN7L3BQ96GX2 97 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 AVENQ9NQS1 362 aaPredicted RBP13.2□□□□□ -0.3
LIG1-221ENST00000613670 SLC5A4Q9NY91 659 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 GJA3Q9Y6H8 435 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 LDHAP00338 332 aaKnown RBP13.2□□□□□ -0.3
LIG1-221ENST00000613670 MUTP22033 750 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 ELK3P41970 407 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 NDUFAF2Q8N183 169 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 TMEM161BQ8NDZ6 487 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 INPP5DQ92835 1189 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 ALKBH8Q96BT7 664 aaKnown RBP13.2□□□□□ -0.3
LIG1-221ENST00000613670 DDX27Q96GQ7 796 aaKnown RBP13.2□□□□□ -0.3
LIG1-221ENST00000613670 PPP1R36Q96LQ0 422 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 WWP1Q9H0M0 922 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 LRMDAQ9H2I8 198 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 SLC24A2Q9UI40 661 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 CORO1CQ9ULV4 474 aaPredicted RBP13.2□□□□□ -0.3
LIG1-221ENST00000613670 APOBEC2Q9Y235 224 aaKnown RBP13.2□□□□□ -0.3
LIG1-221ENST00000613670 TTLL3Q9Y4R7 772 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 FAM237BA0A1B0GVD1 139 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 HNRNPCL1O60812 293 aaKnown RBP13.19□□□□□ -0.3
LIG1-221ENST00000613670 APBA3O96018 575 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 DSG3P32926 999 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 ATXN3P54252 364 aaPredicted RBP13.19□□□□□ -0.3
LIG1-221ENST00000613670 HADHBP55084 474 aaKnown RBP13.19□□□□□ -0.3
LIG1-221ENST00000613670 YWHAEP62258 255 aaKnown RBP13.19□□□□□ -0.3
LIG1-221ENST00000613670 FAAP100Q0VG06 881 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 PIGHQ14442 188 aaPredicted RBP13.19□□□□□ -0.3
LIG1-221ENST00000613670 CDAN1Q8IWY9 1227 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 ST13P4Q8IZP2 240 aaPredicted RBP13.19□□□□□ -0.3
LIG1-221ENST00000613670 C7orf31Q8N865 590 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 LMO3Q8TAP4 145 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 JPH1Q9HDC5 661 aaPredicted RBP13.19□□□□□ -0.3
LIG1-221ENST00000613670 VCX3AQ9NNX9 186 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 ARL8BQ9NVJ2 186 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 MROH7Q68CQ1 1323 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 ADGRA3Q8IWK6 1321 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 PLIN4Q96Q06 1357 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 BCAR1P56945 870 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 BLMHQ13867 455 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 KHDC1Q4VXA5 237 aaKnown RBP13.19□□□□□ -0.3
LIG1-221ENST00000613670 SLC45A4Q5BKX6 768 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 ZNF667Q5HYK9 610 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 RFWD3Q6PCD5 774 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 IZUMO2Q6UXV1 221 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 SYTL5Q8TDW5 730 aaPredicted RBP13.19□□□□□ -0.3
LIG1-221ENST00000613670 PSPC1Q8WXF1 523 aaKnown RBP13.19□□□□□ -0.3
LIG1-221ENST00000613670 E2F7Q96AV8 911 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 ANKRD36BP1Q96IX9 119 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 HERPUD2Q9BSE4 406 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 ANKEF1Q9NU02 776 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 C2CD2Q9Y426 696 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 M0QYV0 167 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 YARSP54577 528 aaKnown RBP13.19□□□□□ -0.3
LIG1-221ENST00000613670 JAG1P78504 1218 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 MAP7Q14244 749 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 NBPF20Q3BBV1 942 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 PPP1R2P3Q6NXS1 205 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 LRRC74BQ6ZQY2 392 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 CLNKQ7Z7G1 428 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 RSPH3Q86UC2 560 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 SIAH1Q8IUQ4 282 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 KATNAL2Q8IYT4 538 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms