RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 NPTXRO95502 500 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 MYCLP12524 364 aaPredicted RBP19.28■□□□□ 0.68
UPF1-210ENST00000600689 IRX4P78413 519 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 SEZ6Q53EL9 994 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 FNBP1LQ5T0N5 605 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 SCARA3Q6AZY7 606 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 FAM43BQ6ZT52 329 aaPredicted RBP19.28■□□□□ 0.68
UPF1-210ENST00000600689 SHKBP1Q8TBC3 707 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 RANBP17Q9H2T7 1088 aaKnown RBP19.28■□□□□ 0.68
UPF1-210ENST00000600689 TMEM8AQ9HCN3 771 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 WDR35Q9P2L0 1181 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 MYPNQ86TC9 1320 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 COL2A1P02458 1487 aaPredicted RBP19.28■□□□□ 0.68
UPF1-210ENST00000600689 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.28■□□□□ 0.68
UPF1-210ENST00000600689 WNT10BO00744 389 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 ATP2A1O14983 1001 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 P4HA2O15460 535 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 MUTP22033 750 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 GLRA2P23416 452 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 YWHABP31946 246 aaKnown RBP19.28■□□□□ 0.68
UPF1-210ENST00000600689 CAP2P40123 477 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 ACOT2P49753 483 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 IRGCQ6NXR0 463 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 FAM136AQ96C01 138 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 NMUR2Q9GZQ4 415 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 ZWILCHQ9H900 591 aa19.28■□□□□ 0.68
UPF1-210ENST00000600689 E7ENQ6 273 aa19.27■□□□□ 0.68
UPF1-210ENST00000600689 RPS6KA3P51812 740 aa19.27■□□□□ 0.68
UPF1-210ENST00000600689 CXCL9Q07325 125 aa19.27■□□□□ 0.68
UPF1-210ENST00000600689 SPP2Q13103 211 aa19.27■□□□□ 0.68
UPF1-210ENST00000600689 SMAD1Q15797 465 aaKnown RBP19.27■□□□□ 0.68
UPF1-210ENST00000600689 HIF1AQ16665 826 aa19.27■□□□□ 0.68
UPF1-210ENST00000600689 LDHDQ86WU2 507 aa19.27■□□□□ 0.68
UPF1-210ENST00000600689 PPARGC1AQ9UBK2 798 aaKnown RBP19.27■□□□□ 0.68
UPF1-210ENST00000600689 PSME4Q14997 1843 aa19.27■□□□□ 0.68
UPF1-210ENST00000600689 TCRBV7S3A2A0A539 114 aa19.27■□□□□ 0.68
UPF1-210ENST00000600689 LPXNO60711 386 aa19.27■□□□□ 0.68
UPF1-210ENST00000600689 GDF10P55107 478 aa19.27■□□□□ 0.68
UPF1-210ENST00000600689 ARL4CP56559 192 aa19.27■□□□□ 0.68
UPF1-210ENST00000600689 GEMIN4P57678 1058 aaKnown RBP19.27■□□□□ 0.68
UPF1-210ENST00000600689 MAMLD1Q13495 774 aa19.27■□□□□ 0.68
UPF1-210ENST00000600689 CFAP157Q5JU67 520 aa19.27■□□□□ 0.68
UPF1-210ENST00000600689 LIN9Q5TKA1 542 aa19.27■□□□□ 0.68
UPF1-210ENST00000600689 IZUMO2Q6UXV1 221 aa19.27■□□□□ 0.68
UPF1-210ENST00000600689 GALNT15Q8N3T1 639 aa19.27■□□□□ 0.68
UPF1-210ENST00000600689 FBXO36Q8NEA4 188 aa19.27■□□□□ 0.68
UPF1-210ENST00000600689 THTPAQ9BU02 230 aa19.27■□□□□ 0.68
UPF1-210ENST00000600689 RANBP1P43487 201 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 RIBC1Q8N443 379 aaPredicted RBP19.26■□□□□ 0.67
UPF1-210ENST00000600689 MCEEQ96PE7 176 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 SHCBP1LQ9BZQ2 653 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 KLHL33A6NCF5 533 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 MEI4A8MW99 385 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 E5RJQ4 531 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 FCHO1O14526 889 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 FAM155BO75949 473 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 BASP1P80723 227 aaKnown RBP19.26■□□□□ 0.67
UPF1-210ENST00000600689 LAMB3Q13751 1172 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 BRDTQ58F21 947 aaPredicted RBP19.26■□□□□ 0.67
UPF1-210ENST00000600689 DCUN1D2Q6PH85 259 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 MFN1Q8IWA4 741 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 CTAGE3PQ8IX95 158 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 CHURC1Q8WUH1 139 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 JDP2Q8WYK2 163 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 PCMTD2Q9NV79 361 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 TBX20Q9UMR3 447 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 CLUHO75153 1309 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 TJP3O95049 919 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 MT-ND3P03897 115 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 P4HBP07237 508 aaKnown RBP19.26■□□□□ 0.67
UPF1-210ENST00000600689 EIF2AK2P19525 551 aaKnown RBP19.26■□□□□ 0.67
UPF1-210ENST00000600689 SLC1A1P43005 524 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 LBRQ14739 615 aaKnown RBP19.26■□□□□ 0.67
UPF1-210ENST00000600689 ZNF341Q9BYN7 854 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 KMT5AQ9NQR1 393 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 KRT82Q9NSB4 513 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 ZNRF3Q9ULT6 936 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 AGTPBP1Q9UPW5 1226 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 ASB3Q9Y575 518 aa19.26■□□□□ 0.67
UPF1-210ENST00000600689 LMNAP02545 664 aaKnown RBP19.25■□□□□ 0.67
UPF1-210ENST00000600689 NPTX2P47972 431 aa19.25■□□□□ 0.67
UPF1-210ENST00000600689 WNT7BP56706 349 aa19.25■□□□□ 0.67
UPF1-210ENST00000600689 WDR72Q3MJ13 1102 aa19.25■□□□□ 0.67
UPF1-210ENST00000600689 SH3TC2Q8TF17 1288 aa19.25■□□□□ 0.67
UPF1-210ENST00000600689 LRRN4Q8WUT4 740 aa19.25■□□□□ 0.67
UPF1-210ENST00000600689 SIGLEC16A6NMB1 481 aa19.25■□□□□ 0.67
UPF1-210ENST00000600689 GNA15P30679 374 aa19.25■□□□□ 0.67
UPF1-210ENST00000600689 NIM1KQ8IY84 436 aa19.25■□□□□ 0.67
UPF1-210ENST00000600689 BSNDQ8WZ55 320 aa19.25■□□□□ 0.67
UPF1-210ENST00000600689 VTI1AQ96AJ9 217 aa19.25■□□□□ 0.67
UPF1-210ENST00000600689 SLC13A1Q9BZW2 595 aa19.25■□□□□ 0.67
UPF1-210ENST00000600689 SMYD3Q9H7B4 428 aa19.25■□□□□ 0.67
UPF1-210ENST00000600689 SYNCQ9H7C4 482 aa19.25■□□□□ 0.67
UPF1-210ENST00000600689 RABGEF1Q9UJ41 708 aa19.25■□□□□ 0.67
UPF1-210ENST00000600689 NFIBO00712 420 aa19.24■□□□□ 0.67
UPF1-210ENST00000600689 PYGLP06737 847 aa19.24■□□□□ 0.67
UPF1-210ENST00000600689 PYGBP11216 843 aa19.24■□□□□ 0.67
UPF1-210ENST00000600689 GPC3P51654 580 aa19.24■□□□□ 0.67
UPF1-210ENST00000600689 ALDH18A1P54886 795 aaKnown RBP19.24■□□□□ 0.67
UPF1-210ENST00000600689 RASA2Q15283 850 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms