RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 IKZF4Q9H2S9 585 aa6.61□□□□□ -1.35
VRK3-220ENST00000600259 EBF3Q9H4W6 596 aa6.61□□□□□ -1.35
VRK3-220ENST00000600259 ASB7Q9H672 318 aa6.61□□□□□ -1.35
VRK3-220ENST00000600259 VPS45Q9NRW7 570 aa6.61□□□□□ -1.35
VRK3-220ENST00000600259 TDP1Q9NUW8 608 aa6.61□□□□□ -1.35
VRK3-220ENST00000600259 THG1LQ9NWX6 298 aaKnown RBP6.61□□□□□ -1.35
VRK3-220ENST00000600259 LARSQ9P2J5 1176 aaKnown RBP6.61□□□□□ -1.35
VRK3-220ENST00000600259 ZMYM5Q9UJ78 669 aa6.61□□□□□ -1.35
VRK3-220ENST00000600259 DERAQ9Y315 318 aa6.61□□□□□ -1.35
VRK3-220ENST00000600259 PKD1L2Q7Z442 2459 aa6.61□□□□□ -1.35
VRK3-220ENST00000600259 DSPP15924 2871 aaKnown RBP6.61□□□□□ -1.35
VRK3-220ENST00000600259 ANKRD11Q6UB99 2663 aaPredicted RBP6.61□□□□□ -1.35
VRK3-220ENST00000600259 C4orf47A7E2U8 309 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 C1QTNF9BB2RNN3 333 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 H0YCG3 227 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 TOP3BO95985 862 aaKnown RBP6.6□□□□□ -1.35
VRK3-220ENST00000600259 C1QTNF9P0C862 333 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 DRD1P21728 446 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 SCP2P22307 547 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 DDX6P26196 483 aaKnown RBP eCLIP6.6□□□□□ -1.35
VRK3-220ENST00000600259 ADSSP30520 456 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 ACOT2P49753 483 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 LIG4P49917 911 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 ZXDBP98169 803 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 SMARCB1Q12824 385 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 TMEM132DQ14C87 1099 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 PDGFRLQ15198 375 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 ZRSR1Q15695 479 aaKnown RBP6.6□□□□□ -1.35
VRK3-220ENST00000600259 FBXO43Q4G163 708 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 ARL6IP4Q66PJ3 421 aaKnown RBP6.6□□□□□ -1.35
VRK3-220ENST00000600259 C12orf50Q8NA57 414 aaPredicted RBP6.6□□□□□ -1.35
VRK3-220ENST00000600259 STKLD1Q8NE28 680 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 FAM212AQ96EL1 285 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 BICD1Q96G01 975 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 MYRFLQ96LU7 910 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 HHIPQ96QV1 700 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 CYP2S1Q96SQ9 504 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 SEPT5Q99719 369 aaPredicted RBP6.6□□□□□ -1.35
VRK3-220ENST00000600259 MSTO1Q9BUK6 570 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 LINC00597Q9H2U6 94 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 ST6GALNAC4Q9H4F1 302 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 ECT2Q9H8V3 914 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 DPP3Q9NY33 737 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 GCNT4Q9P109 453 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 DSEQ9UL01 958 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 ODF2LQ9ULJ1 636 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 SLC8A2Q9UPR5 921 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 C2CD2Q9Y426 696 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 RALGAPA1Q6GYQ0 2036 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 DMXL2Q8TDJ6 3036 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 PDCD11Q14690 1871 aaKnown RBP6.6□□□□□ -1.35
VRK3-220ENST00000600259 SPAG17Q6Q759 2223 aa6.6□□□□□ -1.35
VRK3-220ENST00000600259 ABCA7Q8IZY2 2146 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 ATG2BQ96BY7 2078 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 CACNA1EQ15878 2313 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 GREB1Q4ZG55 1949 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 LNP1A1A4G5 178 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 VWA3AA6NCI4 1184 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 KPNA7A9QM74 516 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 K7EQS6 105 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 GABRDO14764 452 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 HNRNPDLO14979 420 aaKnown RBP6.59□□□□□ -1.35
VRK3-220ENST00000600259 SLC26A4O43511 780 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 TRAK2O60296 914 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 PPP1R37O75864 691 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 NOL4O94818 638 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 APBB3O95704 486 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 CAVIN2O95810 425 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 CSH1P0DML2 217 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 CSH2P0DML3 217 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 CCDC192P0DO97 292 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 HOXB3P14651 431 aaPredicted RBP6.59□□□□□ -1.35
VRK3-220ENST00000600259 HNRNPLP14866 589 aaKnown RBP eCLIP6.59□□□□□ -1.35
VRK3-220ENST00000600259 TCF3P15923 654 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 CYP2F1P24903 491 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 AVPR1AP37288 418 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 OPRD1P41143 372 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 MATR3P43243 847 aaKnown RBP eCLIP6.59□□□□□ -1.35
VRK3-220ENST00000600259 TAF6P49848 677 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 IRX4P78413 519 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 GRIN1Q05586 938 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 USP4Q13107 963 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 DMC1Q14565 340 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 MCM6Q14566 821 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 VEPH1Q14D04 833 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 ZNF77Q15935 545 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 DDR2Q16832 855 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 CCDC142Q17RM4 750 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 EML3Q32P44 896 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 ZC2HC1CQ53FD0 456 aaPredicted RBP6.59□□□□□ -1.35
VRK3-220ENST00000600259 SDHAF4Q5VUM1 108 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 RNF43Q68DV7 783 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 PSAPL1Q6NUJ1 521 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 ZNF720Q7Z2F6 126 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 LIMS2Q7Z4I7 341 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 OSTM1Q86WC4 334 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 RASSF3Q86WH2 238 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 GPBP1Q86WP2 473 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 DCP1BQ8IZD4 617 aaKnown RBP6.59□□□□□ -1.35
VRK3-220ENST00000600259 THEM5Q8N1Q8 247 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms