RNA–Protein interactions for RNA: ENST00000582252.1

CCDC47-204, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2 BASIC

Gene CCDC47, Length 1,719 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-204ENST00000582252 SLC4A11Q8NBS3 891 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 GRK7Q8WTQ7 553 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 RBM41Q96IZ5 413 aaKnown RBP23.96■■□□□ 1.43
CCDC47-204ENST00000582252 SNX27Q96L92 541 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 ZIM3Q96PE6 472 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 TSPAN18Q96SJ8 248 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 TSEN34Q9BSV6 310 aaKnown RBP23.96■■□□□ 1.43
CCDC47-204ENST00000582252 SDCBP2Q9H190 292 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 FEZ2Q9UHY8 353 aaPredicted RBP23.96■■□□□ 1.43
CCDC47-204ENST00000582252 TCRBV5S1A1TA0A578 114 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 MOXD2PA6NHM9 499 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 HSPA8P11142 646 aaKnown RBP23.96■■□□□ 1.43
CCDC47-204ENST00000582252 HOXA11P31270 313 aaPredicted RBP23.96■■□□□ 1.43
CCDC47-204ENST00000582252 CDH8P55286 799 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 INCA1Q0VD86 236 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 STILQ15468 1287 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 NBPF20Q3BBV1 942 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 SPDYCQ5MJ68 293 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 LRRC38Q5VT99 294 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 DENND1BQ6P3S1 775 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 LRIG3Q6UXM1 1119 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 SYDE1Q6ZW31 735 aaPredicted RBP23.96■■□□□ 1.43
CCDC47-204ENST00000582252 WDTC1Q8N5D0 677 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 ARRDC4Q8NCT1 418 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 SLCO2A1Q92959 643 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 MCEEQ96PE7 176 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 FMO2Q99518 471 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 MIS12Q9H081 205 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 USTQ9Y2C2 406 aa23.96■■□□□ 1.43
CCDC47-204ENST00000582252 ECEL1O95672 775 aa23.95■■□□□ 1.42
CCDC47-204ENST00000582252 RUFY4Q6ZNE9 571 aa23.95■■□□□ 1.42
CCDC47-204ENST00000582252 CTU1Q7Z7A3 348 aaKnown RBP23.95■■□□□ 1.42
CCDC47-204ENST00000582252 NIPA2Q8N8Q9 360 aa23.95■■□□□ 1.42
CCDC47-204ENST00000582252 TRIM31Q9BZY9 425 aa23.95■■□□□ 1.42
CCDC47-204ENST00000582252 FAM204AQ9H8W3 233 aa23.95■■□□□ 1.42
CCDC47-204ENST00000582252 SNTG2Q9NY99 539 aa23.95■■□□□ 1.42
CCDC47-204ENST00000582252 GTF2IRD1Q9UHL9 959 aa23.95■■□□□ 1.42
CCDC47-204ENST00000582252 DNAH12Q6ZR08 3092 aa23.94■■□□□ 1.42
CCDC47-204ENST00000582252 ATF7P17544 494 aaPredicted RBP23.94■■□□□ 1.42
CCDC47-204ENST00000582252 ACLYP53396 1101 aa23.94■■□□□ 1.42
CCDC47-204ENST00000582252 CNGA2Q16280 664 aa23.94■■□□□ 1.42
CCDC47-204ENST00000582252 ODF2Q5BJF6 829 aa23.94■■□□□ 1.42
CCDC47-204ENST00000582252 PPP1R15BQ5SWA1 713 aa23.94■■□□□ 1.42
CCDC47-204ENST00000582252 SESTD1Q86VW0 696 aa23.94■■□□□ 1.42
CCDC47-204ENST00000582252 PPP1R13LQ8WUF5 828 aa23.94■■□□□ 1.42
CCDC47-204ENST00000582252 DNAJB3Q8WWF6 145 aa23.94■■□□□ 1.42
CCDC47-204ENST00000582252 ELOVL4Q9GZR5 314 aa23.94■■□□□ 1.42
CCDC47-204ENST00000582252 UNC93B1Q9H1C4 597 aa23.94■■□□□ 1.42
CCDC47-204ENST00000582252 SYNCQ9H7C4 482 aa23.94■■□□□ 1.42
CCDC47-204ENST00000582252 DDX56Q9NY93 547 aaKnown RBP23.94■■□□□ 1.42
CCDC47-204ENST00000582252 GOLGA6CA6NDK9 693 aa23.93■■□□□ 1.42
CCDC47-204ENST00000582252 TREHO43280 583 aa23.93■■□□□ 1.42
CCDC47-204ENST00000582252 XPOTO43592 962 aaKnown RBP23.93■■□□□ 1.42
CCDC47-204ENST00000582252 GOLGA6DP0CG33 693 aa23.93■■□□□ 1.42
CCDC47-204ENST00000582252 HIC1Q14526 733 aa23.93■■□□□ 1.42
CCDC47-204ENST00000582252 TTC27Q6P3X3 843 aa23.93■■□□□ 1.42
CCDC47-204ENST00000582252 RCOR2Q8IZ40 523 aa23.93■■□□□ 1.42
CCDC47-204ENST00000582252 LRRC52Q8N7C0 313 aa23.93■■□□□ 1.42
CCDC47-204ENST00000582252 RIN2Q8WYP3 895 aaPredicted RBP23.93■■□□□ 1.42
CCDC47-204ENST00000582252 NEUROG2Q9H2A3 272 aa23.93■■□□□ 1.42
CCDC47-204ENST00000582252 PAK6Q9NQU5 681 aaPredicted RBP23.93■■□□□ 1.42
CCDC47-204ENST00000582252 GOLGA6AQ9NYA3 693 aa23.93■■□□□ 1.42
CCDC47-204ENST00000582252 MTRF1LQ9UGC7 380 aaKnown RBP23.93■■□□□ 1.42
CCDC47-204ENST00000582252 WDR3Q9UNX4 943 aaKnown RBP eCLIP23.93■■□□□ 1.42
CCDC47-204ENST00000582252 PDCD11Q14690 1871 aaKnown RBP23.93■■□□□ 1.42
CCDC47-204ENST00000582252 TCRBV7S2A1N4TA0A589 114 aa23.93■■□□□ 1.42
CCDC47-204ENST00000582252 SIGLEC16A6NMB1 481 aa23.93■■□□□ 1.42
CCDC47-204ENST00000582252 CRYBB1P53674 252 aaPredicted RBP23.93■■□□□ 1.42
CCDC47-204ENST00000582252 TAS2R40P59535 323 aa23.93■■□□□ 1.42
CCDC47-204ENST00000582252 RPL7AP62424 266 aaKnown RBP23.93■■□□□ 1.42
CCDC47-204ENST00000582252 ZNF268Q14587 947 aaPredicted RBP23.93■■□□□ 1.42
CCDC47-204ENST00000582252 TAF2Q6P1X5 1199 aa23.93■■□□□ 1.42
CCDC47-204ENST00000582252 ZDHHC14Q8IZN3 488 aa23.93■■□□□ 1.42
CCDC47-204ENST00000582252 FAM76AQ8TAV0 307 aa23.93■■□□□ 1.42
CCDC47-204ENST00000582252 HEXIM2Q96MH2 286 aaKnown RBP23.93■■□□□ 1.42
CCDC47-204ENST00000582252 GLT1D1Q96MS3 346 aa23.93■■□□□ 1.42
CCDC47-204ENST00000582252 NT5C1AQ9BXI3 368 aa23.93■■□□□ 1.42
CCDC47-204ENST00000582252 DNAI2Q9GZS0 605 aa23.93■■□□□ 1.42
CCDC47-204ENST00000582252 GOLGA6L10A6NI86 522 aa23.92■■□□□ 1.42
CCDC47-204ENST00000582252 MICAL2O94851 1124 aa23.92■■□□□ 1.42
CCDC47-204ENST00000582252 COPS2P61201 443 aa23.92■■□□□ 1.42
CCDC47-204ENST00000582252 SNX17Q15036 470 aa23.92■■□□□ 1.42
CCDC47-204ENST00000582252 PTPN20Q4JDL3 420 aa23.92■■□□□ 1.42
CCDC47-204ENST00000582252 FAM47CQ5HY64 1035 aa23.92■■□□□ 1.42
CCDC47-204ENST00000582252 IPO4Q8TEX9 1081 aaKnown RBP23.92■■□□□ 1.42
CCDC47-204ENST00000582252 FNIP1Q8TF40 1166 aa23.92■■□□□ 1.42
CCDC47-204ENST00000582252 EIF2AQ9BY44 585 aaKnown RBP23.92■■□□□ 1.42
CCDC47-204ENST00000582252 CDHR5Q9HBB8 845 aa23.92■■□□□ 1.42
CCDC47-204ENST00000582252 CNTN3Q9P232 1028 aa23.92■■□□□ 1.42
CCDC47-204ENST00000582252 UBQLN1Q9UMX0 589 aaKnown RBP23.92■■□□□ 1.42
CCDC47-204ENST00000582252 M0QYV0 167 aa23.91■■□□□ 1.42
CCDC47-204ENST00000582252 KRT3P12035 628 aa23.91■■□□□ 1.42
CCDC47-204ENST00000582252 HSD17B3P37058 310 aa23.91■■□□□ 1.42
CCDC47-204ENST00000582252 CTCFP49711 727 aaPredicted RBP23.91■■□□□ 1.42
CCDC47-204ENST00000582252 PSMC1P62191 440 aaKnown RBP23.91■■□□□ 1.42
CCDC47-204ENST00000582252 PPP1R7Q15435 360 aa23.91■■□□□ 1.42
CCDC47-204ENST00000582252 CYP4A22Q5TCH4 519 aa23.91■■□□□ 1.42
CCDC47-204ENST00000582252 TMC3Q7Z5M5 1100 aa23.91■■□□□ 1.42
CCDC47-204ENST00000582252 TWNKQ96RR1 684 aa23.91■■□□□ 1.42
CCDC47-204ENST00000582252 OSBPL8Q9BZF1 889 aa23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms