RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SLC27A5Q9Y2P5 690 aa10.46□□□□□ -0.73
CLK3-208ENST00000562626 R3HCC1Q9Y3T6 440 aaKnown RBP10.46□□□□□ -0.73
CLK3-208ENST00000562626 GTPBP10A4D1E9 387 aaKnown RBP10.45□□□□□ -0.74
CLK3-208ENST00000562626 GRXCR2A6NFK2 248 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 LRRC10BA6NIK2 292 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 SMTNL1A8MU46 457 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 LGALS16A8MUM7 142 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 CLDN5O00501 218 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 CILPO75339 1184 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 NOL4O94818 638 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 KCNA5P22460 613 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 RAD23BP54727 409 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 ADCY1Q08828 1119 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 DUSP4Q13115 394 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 SKIV2LQ15477 1246 aaKnown RBP10.45□□□□□ -0.74
CLK3-208ENST00000562626 ZNF394Q53GI3 561 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 MDH1BQ5I0G3 518 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 IQCEQ6IPM2 695 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 FAM171BQ6P995 826 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 PDXDC1Q6P996 788 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 GBP6Q6ZN66 633 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 PAQR9Q6ZVX9 377 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 GPIHBP1Q8IV16 184 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 PPM1KQ8N3J5 372 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 C12orf29Q8N999 325 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 SLC7A14Q8TBB6 771 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 MYLPFQ96A32 169 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 ZNF707Q96C28 371 aaPredicted RBP10.45□□□□□ -0.74
CLK3-208ENST00000562626 NT5C1BQ96P26 610 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 CDCA3Q99618 268 aaPredicted RBP10.45□□□□□ -0.74
CLK3-208ENST00000562626 ZSWIM1Q9BR11 485 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 ACBD6Q9BR61 282 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 B3GNT5Q9BYG0 378 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 IMPG2Q9BZV3 1241 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 S1PR5Q9H228 398 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 GANQ9H2C0 597 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 SNX25Q9H3E2 840 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 ACP6Q9NPH0 428 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 CISHQ9NSE2 258 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 MIA3Q5JRA6 1907 aa10.45□□□□□ -0.74
CLK3-208ENST00000562626 BECN2A8MW95 431 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 A8MXQ7 604 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 PES1O00541 588 aaKnown RBP10.44□□□□□ -0.74
CLK3-208ENST00000562626 ZMYND10O75800 440 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 C8AP07357 584 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 CCDC130P13994 396 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 ATF2P15336 505 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 PTPN1P18031 435 aaKnown RBP10.44□□□□□ -0.74
CLK3-208ENST00000562626 ATF6P18850 670 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 CDK11BP21127 795 aaKnown RBP10.44□□□□□ -0.74
CLK3-208ENST00000562626 CYP2F1P24903 491 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 LHX1P48742 406 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 NTHL1P78549 312 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 FANCCQ00597 558 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 CREMQ03060 361 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 BMS1Q14692 1282 aaKnown RBP10.44□□□□□ -0.74
CLK3-208ENST00000562626 SYCP1Q15431 976 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 EXOC3L4Q17RC7 722 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 WDR44Q5JSH3 913 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 RARS2Q5T160 578 aaKnown RBP10.44□□□□□ -0.74
CLK3-208ENST00000562626 SDHAF4Q5VUM1 108 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 POTEHQ6S545 545 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 TMC5Q6UXY8 1006 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 TCEAL8Q8IYN2 117 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 THEM5Q8N1Q8 247 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 SLC4A11Q8NBS3 891 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 B3GALNT2Q8NCR0 500 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.44□□□□□ -0.74
CLK3-208ENST00000562626 SPATA18Q8TC71 538 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 PCED1BQ96HM7 432 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 LSM14BQ9BX40 385 aaKnown RBP10.44□□□□□ -0.74
CLK3-208ENST00000562626 ZNF518BQ9C0D4 1074 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 GPR88Q9GZN0 384 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 CYP3A43Q9HB55 503 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 CYP4F11Q9HBI6 524 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 UBE2TQ9NPD8 197 aaPredicted RBP10.44□□□□□ -0.74
CLK3-208ENST00000562626 RTN4Q9NQC3 1192 aaKnown RBP10.44□□□□□ -0.74
CLK3-208ENST00000562626 FAM49BQ9NUQ9 324 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 HCFC1R1Q9NWW0 138 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 ABI2Q9NYB9 513 aaPredicted RBP10.44□□□□□ -0.74
CLK3-208ENST00000562626 AFF4Q9UHB7 1163 aaKnown RBP10.44□□□□□ -0.74
CLK3-208ENST00000562626 CDH9Q9ULB4 789 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 INSL5Q9Y5Q6 135 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 FHOD1Q9Y613 1164 aa10.44□□□□□ -0.74
CLK3-208ENST00000562626 MYOFQ9NZM1 2061 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 A0A1B0GTH6 734 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 ARHGEF37A1IGU5 675 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 CCL16O15467 120 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 BEST1O76090 585 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 PAPLNO95428 1278 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 FAM163BP0C2L3 166 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 SSTR3P32745 418 aaPredicted RBP10.43□□□□□ -0.74
CLK3-208ENST00000562626 KCNQ1P51787 676 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 ZNF132P52740 706 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 ARHGAP44Q17R89 818 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 KLHDC7AQ5VTJ3 777 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 TPGS2Q68CL5 300 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 PPFIBP1Q86W92 1011 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 FUKQ8N0W3 1084 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 CRYBG2Q8N1P7 616 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms