RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 PPM1EQ8WY54 764 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 MYLPFQ96A32 169 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 ELMO3Q96BJ8 720 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 IQCDQ96DY2 449 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 PGLYRP2Q96PD5 576 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 ARID3AQ99856 593 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 ELOVL4Q9GZR5 314 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 SDCBP2Q9H190 292 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 UBE2TQ9NPD8 197 aaPredicted RBP10.73□□□□□ -0.69
USP3-216ENST00000559873 RTN4Q9NQC3 1192 aaKnown RBP10.73□□□□□ -0.69
USP3-216ENST00000559873 ABI2Q9NYB9 513 aaPredicted RBP10.73□□□□□ -0.69
USP3-216ENST00000559873 PCDHB4Q9Y5E5 795 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 BRWD1Q9NSI6 2320 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 XYLBO75191 536 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 POU2F2P09086 479 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 PAEPP09466 180 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 KRT5P13647 590 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 UCHL3P15374 230 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 LMO2P25791 158 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 ANXA13P27216 316 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 ALDH1A3P47895 512 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 SLC8A3P57103 927 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 RPL10AP62906 217 aaKnown RBP10.72□□□□□ -0.69
USP3-216ENST00000559873 CYP27A1Q02318 531 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 KCNMA1Q12791 1236 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 ADAM15Q13444 863 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 RAPGEF1Q13905 1077 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 VEPH1Q14D04 833 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 KLHDC7AQ5VTJ3 777 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 CES5AQ6NT32 575 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 ANKRD54Q6NXT1 300 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 FAM171BQ6P995 826 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 LILRA6Q6PI73 481 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 TMEM270Q6UE05 265 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 VSTM1Q6UX27 236 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 CYP26C1Q6V0L0 522 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 RNF19BQ6ZMZ0 732 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 CACNA2D4Q7Z3S7 1137 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 ACOT1Q86TX2 421 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 ARHGEF19Q8IW93 802 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 CRYBG2Q8N1P7 616 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 CMASQ8NFW8 434 aaPredicted RBP10.72□□□□□ -0.69
USP3-216ENST00000559873 SLC7A14Q8TBB6 771 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 HLA-CQ95604 372 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 SMARCD1Q96GM5 515 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 TMEM176AQ96HP8 235 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 SPAG5Q96R06 1193 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 SEPT5Q99719 369 aaPredicted RBP10.72□□□□□ -0.69
USP3-216ENST00000559873 MED10Q9BTT4 135 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 UBE2ZQ9H832 354 aaPredicted RBP10.72□□□□□ -0.69
USP3-216ENST00000559873 CRTAC1Q9NQ79 661 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 FAM207AQ9NSI2 230 aaPredicted RBP10.72□□□□□ -0.69
USP3-216ENST00000559873 DNAJC12Q9UKB3 198 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 GTF3C4Q9UKN8 822 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 KIAA1257Q9ULG3 409 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 FAM50BQ9Y247 325 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 YIPF1Q9Y548 306 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 INSL5Q9Y5Q6 135 aa10.72□□□□□ -0.69
USP3-216ENST00000559873 MYBPHLA2RUH7 354 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 TRIM66O15016 1216 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 TBX10O75333 385 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 ZMYND10O75800 440 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 CD19P15391 556 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 GTF2F1P35269 517 aaKnown RBP eCLIP10.71□□□□□ -0.69
USP3-216ENST00000559873 USP8P40818 1118 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 MAGEA11P43364 429 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 PLCB2Q00722 1185 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 ITIH3Q06033 890 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 KCNC3Q14003 757 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 STILQ15468 1287 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 TAF12Q16514 161 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 ARHGAP44Q17R89 818 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 AAK1Q2M2I8 961 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 CTC1Q2NKJ3 1217 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 MGAT5BQ3V5L5 792 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 ZNF394Q53GI3 561 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 SGO2Q562F6 1265 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 ITIH5Q86UX2 942 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 UBR7Q8N806 425 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 RBBP8NLQ8NC74 664 aaPredicted RBP10.71□□□□□ -0.69
USP3-216ENST00000559873 VN1R2Q8NFZ6 395 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 SHC3Q92529 594 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 PCED1BQ96HM7 432 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 CEP295NLQ96MC4 621 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 HEXIM2Q96MH2 286 aaKnown RBP10.71□□□□□ -0.69
USP3-216ENST00000559873 RIPOR3Q96MK2 946 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 KREMEN1Q96MU8 473 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 TMEM209Q96SK2 561 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 PKMYT1Q99640 499 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 NUP58Q9BVL2 599 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 RHOBTB2Q9BYZ6 727 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 DPEP3Q9H4B8 488 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 PIDD1Q9HB75 910 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 SIX2Q9NPC8 291 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 EHD2Q9NZN4 543 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 IFNKQ9P0W0 207 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 CEP72Q9P209 647 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 HESX1Q9UBX0 185 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 HMGXB4Q9UGU5 601 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 SIK3Q9Y2K2 1263 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms