RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 HSFX1Q9UBD0 423 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 AFF4Q9UHB7 1163 aaKnown RBP9.83□□□□□ -0.84
LDLR-210ENST00000559340 CNTN6Q9UQ52 1028 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 LUC7L2Q9Y383 392 aaKnown RBP9.83□□□□□ -0.84
LDLR-210ENST00000559340 PCDHB5Q9Y5E4 795 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 CDY1Q9Y6F8 540 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 PLXNA3P51805 1871 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 EPOPA6NHQ4 379 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 FOXN3O00409 490 aaPredicted RBP9.82□□□□□ -0.84
LDLR-210ENST00000559340 TEX28O15482 410 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 NOL4O94818 638 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 CD19P15391 556 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 FERP16591 822 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 LMO2P25791 158 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 SOX5P35711 763 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 PBX1P40424 430 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 TUFMP49411 452 aaKnown RBP9.82□□□□□ -0.84
LDLR-210ENST00000559340 ZBED6P86452 979 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 PLD1Q13393 1074 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 CAMK1Q14012 370 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 SGO2Q562F6 1265 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 TJAP1Q5JTD0 557 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 LIN9Q5TKA1 542 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 FAM171BQ6P995 826 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.82□□□□□ -0.84
LDLR-210ENST00000559340 ACOT1Q86TX2 421 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 FAM71AQ8IYT1 594 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 UBR7Q8N806 425 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 RBBP8NLQ8NC74 664 aaPredicted RBP9.82□□□□□ -0.84
LDLR-210ENST00000559340 B3GALNT2Q8NCR0 500 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 AUTS2Q8WXX7 1259 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 CASP10Q92851 521 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 FUBP3Q96I24 572 aaKnown RBP eCLIP9.82□□□□□ -0.84
LDLR-210ENST00000559340 CLSTN3Q9BQT9 956 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 MED10Q9BTT4 135 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 NAA15Q9BXJ9 866 aaKnown RBP9.82□□□□□ -0.84
LDLR-210ENST00000559340 ABCB6Q9NP58 842 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 ZNHIT6Q9NWK9 470 aaKnown RBP9.82□□□□□ -0.84
LDLR-210ENST00000559340 HESX1Q9UBX0 185 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 CAPN11Q9UMQ6 739 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 FHOD1Q9Y613 1164 aa9.82□□□□□ -0.84
LDLR-210ENST00000559340 A0A0C4DFX4 3053 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 SPDYE4A6NLX3 237 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 HIDE1A8MVS5 230 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 PRRG1O14668 218 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 CLASP2O75122 1294 aaKnown RBP9.81□□□□□ -0.84
LDLR-210ENST00000559340 ABLIM3O94929 683 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 ADCY5O95622 1261 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 ATF2P15336 505 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 RPL17P18621 184 aaKnown RBP9.81□□□□□ -0.84
LDLR-210ENST00000559340 ACO1P21399 889 aaKnown RBP9.81□□□□□ -0.84
LDLR-210ENST00000559340 ACAT1P24752 427 aaKnown RBP9.81□□□□□ -0.84
LDLR-210ENST00000559340 CDC25BP30305 580 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 IRS1P35568 1242 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 MAGEA11P43364 429 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 KLK7P49862 253 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 RAD23BP54727 409 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 SNX16P57768 344 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 RPL10AP62906 217 aaKnown RBP9.81□□□□□ -0.84
LDLR-210ENST00000559340 ROR1Q01973 937 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 CYP27A1Q02318 531 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 DUSP6Q16828 381 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 SLC39A12Q504Y0 691 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 ZNF394Q53GI3 561 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 MDH1BQ5I0G3 518 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 SFMBT2Q5VUG0 894 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 DPY19L2P1Q6NXN4 242 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 GJB7Q6PEY0 223 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 VSTM1Q6UX27 236 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 TMC6Q7Z403 805 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 ZNF677Q86XU0 584 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 PALB2Q86YC2 1186 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 GLYCTKQ8IVS8 523 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 SLC4A11Q8NBS3 891 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 OR10T2Q8NGX3 314 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 SYN2Q92777 582 aaPredicted RBP9.81□□□□□ -0.84
LDLR-210ENST00000559340 KAT5Q92993 513 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 ELMO3Q96BJ8 720 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 CYFIP2Q96F07 1278 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 CEP295NLQ96MC4 621 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 HNRNPABQ99729 332 aaKnown RBP9.81□□□□□ -0.84
LDLR-210ENST00000559340 ARID3AQ99856 593 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 RTP3Q9BQQ7 232 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 ELOVL4Q9GZR5 314 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 PDCL3Q9H2J4 239 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 DZANK1Q9NVP4 752 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 EHD2Q9NZN4 543 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 IMPACTQ9P2X3 320 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 GTF3C4Q9UKN8 822 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 CEP83Q9Y592 693 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 MTCH2Q9Y6C9 303 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 BZW2Q9Y6E2 419 aaKnown RBP9.81□□□□□ -0.84
LDLR-210ENST00000559340 GREB1Q4ZG55 1949 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 BRWD1Q9NSI6 2320 aa9.81□□□□□ -0.84
LDLR-210ENST00000559340 MYBPHLA2RUH7 354 aa9.8□□□□□ -0.84
LDLR-210ENST00000559340 F8VZ95 297 aa9.8□□□□□ -0.84
LDLR-210ENST00000559340 TRIM66O15016 1216 aa9.8□□□□□ -0.84
LDLR-210ENST00000559340 CYP26A1O43174 497 aa9.8□□□□□ -0.84
LDLR-210ENST00000559340 THAP12O43422 761 aa9.8□□□□□ -0.84
LDLR-210ENST00000559340 CSPG5O95196 566 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms