RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 RBM20Q5T481 1227 aaKnown RBP6.24□□□□□ -1.41
SCFD1-211ENST00000554437 TMEM108Q6UXF1 575 aa6.24□□□□□ -1.41
SCFD1-211ENST00000554437 Q6YL49 198 aa6.24□□□□□ -1.41
SCFD1-211ENST00000554437 SLC44A3Q8N4M1 653 aa6.24□□□□□ -1.41
SCFD1-211ENST00000554437 PRRX2Q99811 253 aa6.24□□□□□ -1.41
SCFD1-211ENST00000554437 AIFM2Q9BRQ8 373 aa6.24□□□□□ -1.41
SCFD1-211ENST00000554437 TTPALQ9BTX7 342 aa6.24□□□□□ -1.41
SCFD1-211ENST00000554437 NUP62CLQ9H1M0 184 aa6.24□□□□□ -1.41
SCFD1-211ENST00000554437 SMURF2Q9HAU4 748 aa6.24□□□□□ -1.41
SCFD1-211ENST00000554437 STK32BQ9NY57 414 aa6.24□□□□□ -1.41
SCFD1-211ENST00000554437 ING1Q9UK53 422 aaPredicted RBP6.24□□□□□ -1.41
SCFD1-211ENST00000554437 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.24□□□□□ -1.41
SCFD1-211ENST00000554437 COL4A3Q01955 1670 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 A0A087WWL8 130 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 SRGNP10124 158 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 TRIM27P14373 513 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 PPP3CBP16298 524 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 CD6P30203 668 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 PXNP49023 591 aaPredicted RBP6.23□□□□□ -1.41
SCFD1-211ENST00000554437 LILRA4P59901 499 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 PURAQ00577 322 aaKnown RBP6.23□□□□□ -1.41
SCFD1-211ENST00000554437 SATB1Q01826 763 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 FSTL1Q12841 308 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 SAFBQ15424 915 aaKnown RBP eCLIP6.23□□□□□ -1.41
SCFD1-211ENST00000554437 C3orf38Q5JPI3 329 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 Q6ZPA2 131 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 LNX2Q8N448 690 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 B3GALNT2Q8NCR0 500 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 BEND2Q8NDZ0 799 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 TOR1AIP2Q8NFQ8 470 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 LPIN2Q92539 896 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 MAML1Q92585 1016 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 COQ10AQ96MF6 247 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 ZNF518BQ9C0D4 1074 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 MS4A7Q9GZW8 240 aaPredicted RBP6.23□□□□□ -1.41
SCFD1-211ENST00000554437 KCTD5Q9NXV2 234 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 AFF4Q9UHB7 1163 aaKnown RBP6.23□□□□□ -1.41
SCFD1-211ENST00000554437 PAXBP1Q9Y5B6 917 aa6.23□□□□□ -1.41
SCFD1-211ENST00000554437 GRID2IPA4D2P6 1211 aa6.22□□□□□ -1.41
SCFD1-211ENST00000554437 TMEM233B4DJY2 109 aa6.22□□□□□ -1.41
SCFD1-211ENST00000554437 PEX1O43933 1283 aa6.22□□□□□ -1.41
SCFD1-211ENST00000554437 CYP2C9P11712 490 aa6.22□□□□□ -1.41
SCFD1-211ENST00000554437 XRCC6P12956 609 aaKnown RBP eCLIP6.22□□□□□ -1.41
SCFD1-211ENST00000554437 KRT4P19013 534 aa6.22□□□□□ -1.41
SCFD1-211ENST00000554437 TGM1P22735 817 aa6.22□□□□□ -1.41
SCFD1-211ENST00000554437 LOXL3P58215 753 aa6.22□□□□□ -1.41
SCFD1-211ENST00000554437 HECTD2Q5U5R9 776 aa6.22□□□□□ -1.41
SCFD1-211ENST00000554437 TSHZ1Q6ZSZ6 1077 aa6.22□□□□□ -1.41
SCFD1-211ENST00000554437 AMER2Q8N7J2 671 aa6.22□□□□□ -1.41
SCFD1-211ENST00000554437 RAPGEF4Q8WZA2 1011 aa6.22□□□□□ -1.41
SCFD1-211ENST00000554437 OSBPL9Q96SU4 736 aa6.22□□□□□ -1.41
SCFD1-211ENST00000554437 TPSD1Q9BZJ3 242 aa6.22□□□□□ -1.41
SCFD1-211ENST00000554437 PCED1AQ9H1Q7 454 aa6.22□□□□□ -1.41
SCFD1-211ENST00000554437 SYBUQ9NX95 663 aa6.22□□□□□ -1.41
SCFD1-211ENST00000554437 SHOC2Q9UQ13 582 aa6.22□□□□□ -1.41
SCFD1-211ENST00000554437 SNX13Q9Y5W8 968 aa6.22□□□□□ -1.41
SCFD1-211ENST00000554437 TRIM43BA6NCK2 446 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 APAF1O14727 1248 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 FOXN1O15353 648 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 YY2O15391 372 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 AKAP8O43823 692 aaKnown RBP6.21□□□□□ -1.42
SCFD1-211ENST00000554437 RAMP2O60895 175 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 MYL1P05976 194 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 RPL17P18621 184 aaKnown RBP6.21□□□□□ -1.42
SCFD1-211ENST00000554437 HNRNPMP52272 730 aaKnown RBP eCLIP6.21□□□□□ -1.423e-6■■■■□ 25.9
SCFD1-211ENST00000554437 WNT3P56703 355 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 KRT17Q04695 432 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 MPP3Q13368 585 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 VPS53Q5VIR6 699 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 DCAF12L1Q5VU92 463 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 VWA1Q6PCB0 445 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 Q6ZNX1 250 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 NOL8Q76FK4 1167 aaKnown RBP6.21□□□□□ -1.42
SCFD1-211ENST00000554437 MRGPRGQ86SM5 289 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.21□□□□□ -1.42
SCFD1-211ENST00000554437 PJA1Q8NG27 643 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 LINC00476Q8WZB0 136 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 TRIM43Q96BQ3 446 aaPredicted RBP6.21□□□□□ -1.42
SCFD1-211ENST00000554437 NMD3Q96D46 503 aaKnown RBP6.21□□□□□ -1.42
SCFD1-211ENST00000554437 FBXL20Q96IG2 436 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 NELL2Q99435 816 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 ACTRT3Q9BYD9 372 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 PCGF6Q9BYE7 350 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 AMBRA1Q9C0C7 1298 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 BTBD1Q9H0C5 482 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 A1CFQ9NQ94 594 aaKnown RBP6.21□□□□□ -1.42
SCFD1-211ENST00000554437 ZSCAN32Q9NX65 697 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 EPN1Q9Y6I3 576 aaPredicted RBP6.21□□□□□ -1.42
SCFD1-211ENST00000554437 MAST3O60307 1309 aa6.21□□□□□ -1.42
SCFD1-211ENST00000554437 RHPN2P1A8MT19 583 aa6.2□□□□□ -1.42
SCFD1-211ENST00000554437 GCP02774 474 aa6.2□□□□□ -1.42
SCFD1-211ENST00000554437 NBPF7P0C2Y1 421 aaPredicted RBP6.2□□□□□ -1.42
SCFD1-211ENST00000554437 SEC24CP53992 1094 aa6.2□□□□□ -1.42
SCFD1-211ENST00000554437 RPS16P62249 146 aaKnown RBP6.2□□□□□ -1.42
SCFD1-211ENST00000554437 ITIH3Q06033 890 aa6.2□□□□□ -1.42
SCFD1-211ENST00000554437 SFRP4Q6FHJ7 346 aaPredicted RBP6.2□□□□□ -1.42
SCFD1-211ENST00000554437 SESTD1Q86VW0 696 aa6.2□□□□□ -1.42
SCFD1-211ENST00000554437 MICU3Q86XE3 530 aa6.2□□□□□ -1.42
SCFD1-211ENST00000554437 LDLRAD3Q86YD5 345 aa6.2□□□□□ -1.42
SCFD1-211ENST00000554437 KRT78Q8N1N4 520 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms