RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 VCPP55072 806 aaKnown RBP7.9□□□□□ -1.15
LIMA1-213ENST00000552720 TFDP1Q14186 410 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 TAF5Q15542 800 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 CCDC142Q17RM4 750 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 TFDP3Q5H9I0 405 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 PPP1R15BQ5SWA1 713 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 ZNF449Q6P9G9 518 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 EMC1Q8N766 993 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 GBP7Q8N8V2 638 aaPredicted RBP7.9□□□□□ -1.15
LIMA1-213ENST00000552720 CEP120Q8N960 986 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 ACTL9Q8TC94 416 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 ZBTB10Q96DT7 871 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 RBM41Q96IZ5 413 aaKnown RBP7.9□□□□□ -1.15
LIMA1-213ENST00000552720 WRNIP1Q96S55 665 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 PCYT2Q99447 389 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 TCHPQ9BT92 498 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 CISHQ9NSE2 258 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 CYTH4Q9UIA0 394 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 ACTL7BQ9Y614 415 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 FAM189A1O60320 539 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 CBX6O95503 412 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 PIGRP01833 764 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 GJB1P08034 283 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 CCNB1P14635 433 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 KRT4P19013 534 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 TBXAS1P24557 533 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-213ENST00000552720 ADRA1DP25100 572 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 OTUD4Q01804 1114 aaKnown RBP7.89□□□□□ -1.15
LIMA1-213ENST00000552720 ENPEPQ07075 957 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 MOGSQ13724 837 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 XRRA1Q6P2D8 792 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 DENND1BQ6P3S1 775 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 LVRNQ6Q4G3 990 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 EEPD1Q7L9B9 569 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 ZNF280CQ8ND82 737 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 SLC7A3Q8WY07 619 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 SMC6Q96SB8 1091 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 ALG13Q9NP73 1137 aaKnown RBP7.89□□□□□ -1.15
LIMA1-213ENST00000552720 POLIQ9UNA4 740 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 C15orf41Q9Y2V0 281 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 BPTFQ12830 3046 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 C3orf70A6NLC5 250 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-213ENST00000552720 H0YCG3 227 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 ALOX15BO15296 676 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 PRPF4O43172 522 aaKnown RBP eCLIP7.89□□□□□ -1.15
LIMA1-213ENST00000552720 TYROBPO43914 113 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 CST8O60676 142 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 EDF1O60869 148 aaKnown RBP7.89□□□□□ -1.15
LIMA1-213ENST00000552720 TMEM63AO94886 807 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 SRGAP2CP0DJJ0 459 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 T-ENOLP0DO92 83 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 PTPRAP18433 802 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 MARK3P27448 753 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 CETN2P41208 172 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 CTCFP49711 727 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-213ENST00000552720 CLNS1AP54105 237 aaKnown RBP7.89□□□□□ -1.15
LIMA1-213ENST00000552720 CDH8P55286 799 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 LMNB2Q03252 620 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 OVGP1Q12889 678 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 ACVR2BQ13705 512 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 PRKG1Q13976 671 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 SPARCL1Q14515 664 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 MORF4L2Q15014 288 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 MAPK6Q16659 721 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 PTPN20Q4JDL3 420 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 RAB6CQ53S08 254 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 PLEKHG4Q58EX7 1191 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 SLFN12LQ6IEE8 588 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 DRICH1Q6PGQ1 229 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-213ENST00000552720 VSIG1Q86XK7 387 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 RIBC1Q8N443 379 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-213ENST00000552720 LRRC71Q8N4P6 559 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 PRPF31Q8WWY3 499 aaKnown RBP7.89□□□□□ -1.15
LIMA1-213ENST00000552720 CPT1BQ92523 772 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 ZNF570Q96NI8 536 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 RAB6CQ9H0N0 254 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 R3HDMLQ9H3Y0 253 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 ACAD9Q9H845 621 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 NKX1-2Q9UD57 310 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-213ENST00000552720 PCSK1NQ9UHG2 260 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 RABGEF1Q9UJ41 708 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 FARP1Q9Y4F1 1045 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-213ENST00000552720 AFG3L2Q9Y4W6 797 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 WDR90Q96KV7 1748 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 LOC285556D6RIA3 1793 aa7.89□□□□□ -1.15
LIMA1-213ENST00000552720 MYO18AQ92614 2054 aaKnown RBP7.88□□□□□ -1.15
LIMA1-213ENST00000552720 EIF4E1BA6NMX2 242 aaKnown RBP7.88□□□□□ -1.15
LIMA1-213ENST00000552720 PIK3R2O00459 728 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 MAGEB2O15479 319 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 MSCO60682 206 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 LRCH4O75427 683 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 LDHAP00338 332 aaKnown RBP7.88□□□□□ -1.15
LIMA1-213ENST00000552720 CALB1P05937 261 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 PSMA2P25787 234 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 TFAMQ00059 246 aaKnown RBP7.88□□□□□ -1.15
LIMA1-213ENST00000552720 SLC25A11Q02978 314 aaKnown RBP7.88□□□□□ -1.15
LIMA1-213ENST00000552720 MCL1Q07820 350 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 ZNF638Q14966 1978 aaKnown RBP7.88□□□□□ -1.15
LIMA1-213ENST00000552720 PDK4Q16654 411 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 HIF1AQ16665 826 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms