RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	USP36	Q9P275	1121 aa	Known RBP	4.62	□□□□□ -1.67
USP44-208	ENST00000552440	GULP1	Q9UBP9	304 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	SRP68	Q9UHB9	627 aa	Known RBP	4.62	□□□□□ -1.67
USP44-208	ENST00000552440	OGDHL	Q9ULD0	1010 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	PASK	Q96RG2	1323 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	SYNJ2BP-COX16	A0A087WUM0	186 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	AQP12B	A6NM10	295 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	C22orf46	C9J442	243 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	PHGDH	O43175	533 aa	Known RBP	4.61	□□□□□ -1.67
USP44-208	ENST00000552440	DGKI	O75912	1065 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	RARB	P10826	455 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	RPS2	P15880	293 aa	Known RBP	4.61	□□□□□ -1.67
USP44-208	ENST00000552440	ALDH3A2	P51648	485 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	IL1RL1	Q01638	556 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	EIF4A2	Q14240	407 aa	Known RBP	4.61	□□□□□ -1.67
USP44-208	ENST00000552440	PLS1	Q14651	629 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	EPHA7	Q15375	998 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	ATP2B3	Q16720	1220 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	C1orf141	Q5JVX7	400 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	IRGC	Q6NXR0	463 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	CCBE1	Q6UXH8	406 aa	Predicted RBP	4.61	□□□□□ -1.67
USP44-208	ENST00000552440	OTUD6A	Q7L8S5	288 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	RTN4RL1	Q86UN2	441 aa	Predicted RBP	4.61	□□□□□ -1.67
USP44-208	ENST00000552440	ZC3H18	Q86VM9	953 aa	Known RBP	4.61	□□□□□ -1.67
USP44-208	ENST00000552440	CXorf67	Q86X51	503 aa	Predicted RBP	4.61	□□□□□ -1.67
USP44-208	ENST00000552440	CEP97	Q8IW35	865 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	LGI4	Q8N135	537 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	FAM71B	Q8TC56	605 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	PLEKHO2	Q8TD55	490 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	ZNF606	Q8WXB4	792 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	UROC1	Q96N76	676 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	PTPN18	Q99952	460 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	MXD3	Q9BW11	206 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	CD244	Q9BZW8	370 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	SEMA4A	Q9H3S1	761 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	SAYSD1	Q9NPB0	183 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	KCNH7	Q9NS40	1196 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	KCTD5	Q9NXV2	234 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	MYO1A	Q9UBC5	1043 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	DSE	Q9UL01	958 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	COG5	Q9UP83	839 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	LIMCH1	Q9UPQ0	1083 aa		4.61	□□□□□ -1.67
USP44-208	ENST00000552440	CCDC154	A6NI56	674 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	AP3D1	O14617	1153 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	NDC80	O14777	642 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	SRGAP2	O75044	1071 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	SRGAP2B	P0DMP2	458 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	KRT13	P13646	458 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	EDNRB	P24530	442 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	MAPK4	P31152	587 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	CNR2	P34972	360 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	PRPH	P41219	470 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	MCM2	P49736	904 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	SLC5A3	P53794	718 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	MANF	P55145	182 aa	Known RBP	4.6	□□□□□ -1.67
USP44-208	ENST00000552440	NLRP5	P59047	1200 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	FMO1	Q01740	532 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	TFCP2	Q12800	502 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	PUM1	Q14671	1186 aa	Known RBP eCLIP	4.6	□□□□□ -1.67
USP44-208	ENST00000552440	TMEM132B	Q14DG7	1078 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	CTXN3	Q4LDR2	81 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	CT83	Q5H943	113 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	SLC9C2	Q5TAH2	1124 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	SNX30	Q5VWJ9	437 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	SULT6B1	Q6IMI4	303 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	NAA16	Q6N069	864 aa	Predicted RBP	4.6	□□□□□ -1.67
USP44-208	ENST00000552440	CRTC1	Q6UUV9	634 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	EP400NL	Q6ZTU2	488 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	NUP54	Q7Z3B4	507 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	SESTD1	Q86VW0	696 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	NLGN4X	Q8N0W4	816 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	LINC00482	Q8N8I6	264 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	MOSPD2	Q8NHP6	518 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	IL31RA	Q8NI17	732 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	SMARCC2	Q8TAQ2	1214 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	UHMK1	Q8TAS1	419 aa	Known RBP	4.6	□□□□□ -1.67
USP44-208	ENST00000552440	EAF2	Q96CJ1	260 aa	Predicted RBP	4.6	□□□□□ -1.67
USP44-208	ENST00000552440	FSD1	Q9BTV5	496 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	SLC6A20	Q9NP91	592 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	GJB4	Q9NTQ9	266 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	CPSF2	Q9P2I0	782 aa	Known RBP	4.6	□□□□□ -1.67
USP44-208	ENST00000552440	SH3BGRL2	Q9UJC5	107 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	FBXL5	Q9UKA1	691 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	EDAR	Q9UNE0	448 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	CNPY2	Q9Y2B0	182 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	EPN1	Q9Y6I3	576 aa	Predicted RBP	4.6	□□□□□ -1.67
USP44-208	ENST00000552440	LRRC14B	A6NHZ5	514 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	ISM1	B1AKI9	464 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	C1QTNF3-AMACR	E9PGA6	284 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	ELL2	O00472	640 aa	Predicted RBP	4.6	□□□□□ -1.67
USP44-208	ENST00000552440	HNRNPDL	O14979	420 aa	Known RBP	4.6	□□□□□ -1.67
USP44-208	ENST00000552440	HTRA2	O43464	458 aa	Predicted RBP	4.6	□□□□□ -1.67
USP44-208	ENST00000552440	ERAL1	O75616	437 aa	Known RBP	4.6	□□□□□ -1.67
USP44-208	ENST00000552440	SLC22A3	O75751	556 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	FAM155B	O75949	473 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	PGM3	O95394	542 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	MLYCD	O95822	493 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	SCGB1D1	O95968	90 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	CLEC2L	P0C7M8	214 aa		4.6	□□□□□ -1.67
USP44-208	ENST00000552440	NR2F1	P10589	423 aa		4.6	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms