RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 DMTF1Q9Y222 760 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.71□□□□□ -1.66
CD44-233ENST00000531141 HS3ST3A1Q9Y663 406 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 ANO9A1A5B4 782 aa4.7□□□□□ -1.66
CD44-233ENST00000531141 TMEM191CA6NGB0 347 aa4.7□□□□□ -1.66
CD44-233ENST00000531141 CYR61O00622 381 aa4.7□□□□□ -1.66
CD44-233ENST00000531141 DCLK1O15075 740 aa4.7□□□□□ -1.66
CD44-233ENST00000531141 PMM2O15305 246 aa4.7□□□□□ -1.66
CD44-233ENST00000531141 PROM1O43490 865 aa4.7□□□□□ -1.66
CD44-233ENST00000531141 TRIAP1O43715 76 aa4.7□□□□□ -1.66
CD44-233ENST00000531141 PLIN1O60240 522 aa4.7□□□□□ -1.66
CD44-233ENST00000531141 PQBP1O60828 265 aaKnown RBP4.7□□□□□ -1.66
CD44-233ENST00000531141 MAP4K4O95819 1239 aaPredicted RBP4.7□□□□□ -1.66
CD44-233ENST00000531141 NBPF7P0C2Y1 421 aaPredicted RBP4.7□□□□□ -1.66
CD44-233ENST00000531141 CD6P30203 668 aa4.7□□□□□ -1.66
CD44-233ENST00000531141 KSR2Q6VAB6 950 aa4.7□□□□□ -1.66
CD44-233ENST00000531141 C11orf96Q7Z7L8 435 aa4.7□□□□□ -1.66
CD44-233ENST00000531141 CCDC146Q8IYE0 955 aa4.7□□□□□ -1.66
CD44-233ENST00000531141 B3GALNT2Q8NCR0 500 aa4.7□□□□□ -1.66
CD44-233ENST00000531141 FBXO41Q8TF61 875 aa4.7□□□□□ -1.66
CD44-233ENST00000531141 PTCD3Q96EY7 689 aaKnown RBP4.7□□□□□ -1.66
CD44-233ENST00000531141 CYP4F11Q9HBI6 524 aa4.7□□□□□ -1.66
CD44-233ENST00000531141 CASS4Q9NQ75 786 aa4.7□□□□□ -1.66
CD44-233ENST00000531141 A1CFQ9NQ94 594 aaKnown RBP4.7□□□□□ -1.66
CD44-233ENST00000531141 CPNE7Q9UBL6 633 aa4.7□□□□□ -1.66
CD44-233ENST00000531141 RGS17Q9UGC6 210 aaPredicted RBP4.7□□□□□ -1.66
CD44-233ENST00000531141 FAM50BQ9Y247 325 aa4.7□□□□□ -1.66
CD44-233ENST00000531141 PPP3CBP16298 524 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 ACVRL1P37023 503 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 PXNP49023 591 aaPredicted RBP4.69□□□□□ -1.66
CD44-233ENST00000531141 ZNF134P52741 427 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 FMO1Q01740 532 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 ITIH3Q06033 890 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 CTBP1Q13363 440 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 BOP1Q14137 746 aaKnown RBP4.69□□□□□ -1.66
CD44-233ENST00000531141 RBM20Q5T481 1227 aaKnown RBP4.69□□□□□ -1.66
CD44-233ENST00000531141 TEDDM1Q5T9Z0 273 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 DCAF12L1Q5VU92 463 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 SFRP4Q6FHJ7 346 aaPredicted RBP4.69□□□□□ -1.66
CD44-233ENST00000531141 TMEM108Q6UXF1 575 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 MICU3Q86XE3 530 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 GAS2L3Q86XJ1 694 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 ULK2Q8IYT8 1036 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 MPP5Q8N3R9 675 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 FAM109AQ8N4B1 249 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 SLC15A4Q8N697 577 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 SUPT20HQ8NEM7 779 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 LINC00476Q8WZB0 136 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 Q96MF0 132 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 MESP1Q9BRJ9 268 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 UNKQ9C0B0 810 aaKnown RBP4.69□□□□□ -1.66
CD44-233ENST00000531141 MS4A7Q9GZW8 240 aaPredicted RBP4.69□□□□□ -1.66
CD44-233ENST00000531141 PNPLA8Q9NP80 782 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 SACM1LQ9NTJ5 587 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 SYBUQ9NX95 663 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 COL20A1Q9P218 1284 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 MAST3O60307 1309 aa4.69□□□□□ -1.66
CD44-233ENST00000531141 RHPN2P1A8MT19 583 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 F5H697 171 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 APAF1O14727 1248 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 SLC5A1P13866 664 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 LRPAP1P30533 357 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 LILRA4P59901 499 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 RPS16P62249 146 aaKnown RBP4.68□□□□□ -1.66
CD44-233ENST00000531141 IFIT5Q13325 482 aaKnown RBP4.68□□□□□ -1.66
CD44-233ENST00000531141 MPP3Q13368 585 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 PICALMQ13492 652 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 SF3B3Q15393 1217 aaKnown RBP4.68□□□□□ -1.66
CD44-233ENST00000531141 NBPF8Q3BBV2 869 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 MGAT5BQ3V5L5 792 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 HECTD2Q5U5R9 776 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 VWA1Q6PCB0 445 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 Q6ZPA2 131 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 ZNF627Q7L945 461 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 SESTD1Q86VW0 696 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 SLC44A3Q8N4M1 653 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 BEND2Q8NDZ0 799 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 LPIN2Q92539 896 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 PHKBQ93100 1093 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 SPSB4Q96A44 273 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 PPP1R9BQ96SB3 815 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 STRBPQ96SI9 672 aaKnown RBP4.68□□□□□ -1.66
CD44-233ENST00000531141 NELL2Q99435 816 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 AIFM2Q9BRQ8 373 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 PTDSS2Q9BVG9 487 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 APOL5Q9BWW9 433 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 CORO2BQ9UQ03 480 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 SNX13Q9Y5W8 968 aa4.68□□□□□ -1.66
CD44-233ENST00000531141 PYCARD-AS1I3L0S3 204 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 PEX1O43933 1283 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 ZKSCAN1P17029 563 aaPredicted RBP4.67□□□□□ -1.66
CD44-233ENST00000531141 GATA3P23771 443 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 NXPH1P58417 271 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 KRT17Q04695 432 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 KLF10Q13118 480 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 DAG1Q14118 895 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 FHL2Q14192 279 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 C3orf38Q5JPI3 329 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 Q6ZNX1 250 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 MRGPRGQ86SM5 289 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms