RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 LMBR1Q8WVP7 490 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 POF1BQ8WVV4 589 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 RUFY2Q8WXA3 655 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 RIN2Q8WYP3 895 aaPredicted RBP5.41□□□□□ -1.54
CD44-218ENST00000525469 SUSD6Q92537 303 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 COPS5Q92905 334 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 IQCDQ96DY2 449 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 CCDC51Q96ER9 411 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 TRAPPC9Q96Q05 1148 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 CTAGE1Q96RT6 745 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 CDCA3Q99618 268 aaPredicted RBP5.41□□□□□ -1.54
CD44-218ENST00000525469 RIOK1Q9BRS2 568 aaKnown RBP5.41□□□□□ -1.54
CD44-218ENST00000525469 TCHPQ9BT92 498 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 MIS12Q9H081 205 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 RMI1Q9H9A7 625 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 EBF2Q9HAK2 575 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 KIF9Q9HAQ2 790 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 GPR108Q9NPR9 543 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 ATP8A2Q9NTI2 1148 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 ZNHIT6Q9NWK9 470 aaKnown RBP5.41□□□□□ -1.54
CD44-218ENST00000525469 TRMT1Q9NXH9 659 aaKnown RBP5.41□□□□□ -1.54
CD44-218ENST00000525469 NYAP2Q9P242 653 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 ANGPTL2Q9UKU9 493 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 PAIP2BQ9ULR5 123 aaKnown RBP5.41□□□□□ -1.54
CD44-218ENST00000525469 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.41□□□□□ -1.54
CD44-218ENST00000525469 ZNF148Q9UQR1 794 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.41□□□□□ -1.54
CD44-218ENST00000525469 FPGT-TNNI3KV9GXZ4 949 aa5.41□□□□□ -1.54
CD44-218ENST00000525469 LOXHD1Q8IVV2 1947 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 MYH15Q9Y2K3 1946 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 USP24Q9UPU5 2620 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.4□□□□□ -1.54
CD44-218ENST00000525469 TLDC2A0PJX2 215 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 GOLGA6BA6NDN3 693 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.4□□□□□ -1.54
CD44-218ENST00000525469 H3BQF6 201 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 SCAMP3O14828 347 aaKnown RBP5.4□□□□□ -1.54
CD44-218ENST00000525469 PER2O15055 1255 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 BIRC5O15392 142 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 AP5Z1O43299 807 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 PI15O43692 258 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 MGRN1O60291 552 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 CUTAO60888 179 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 TMCC1O94876 653 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 SEC31AO94979 1220 aaKnown RBP5.4□□□□□ -1.54
CD44-218ENST00000525469 NPTXRO95502 500 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 GH1P01241 217 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 ITGB1P05556 798 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 MMP3P08254 477 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 CCND1P24385 295 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 PSMA5P28066 241 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 TPP2P29144 1249 aaPredicted RBP5.4□□□□□ -1.54
CD44-218ENST00000525469 GNG11P61952 73 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 CCT2P78371 535 aaKnown RBP5.4□□□□□ -1.54
CD44-218ENST00000525469 ZNF200P98182 395 aaPredicted RBP5.4□□□□□ -1.54
CD44-218ENST00000525469 ITIH3Q06033 890 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 XRCC4Q13426 336 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 BAATQ14032 418 aaPredicted RBP5.4□□□□□ -1.54
CD44-218ENST00000525469 SGSM1Q2NKQ1 1148 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 LACTB2Q53H82 288 aaPredicted RBP5.4□□□□□ -1.54
CD44-218ENST00000525469 PPM1JQ5JR12 505 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 ZBTB37Q5TC79 503 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 C12orf60Q5U649 245 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 ZNF746Q6NUN9 644 aaPredicted RBP5.4□□□□□ -1.54
CD44-218ENST00000525469 MIS18BP1Q6P0N0 1132 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 CYB5D1Q6P9G0 228 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 RUFY4Q6ZNE9 571 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 SHISA5Q8N114 240 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 LRRC43Q8N309 656 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 TOP6BLQ8N6T0 577 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 ANKS4BQ8N8V4 417 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 TDRD5Q8NAT2 981 aaKnown RBP5.4□□□□□ -1.54
CD44-218ENST00000525469 ACRBPQ8NEB7 543 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 CXorf38Q8TB03 319 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 SPPL3Q8TCT6 385 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 GRIN3AQ8TCU5 1115 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 AFG1LQ8WV93 481 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 KAT2BQ92831 832 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 NECTIN4Q96NY8 510 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 SMC6Q96SB8 1091 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 IWS1Q96ST2 819 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 GORASP1Q9BQQ3 440 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 DUSP23Q9BVJ7 150 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 APOL5Q9BWW9 433 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 FAM192AQ9GZU8 254 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 EPN3Q9H201 632 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 UNC45AQ9H3U1 944 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 RNF19AQ9NV58 838 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 DACT1Q9NYF0 836 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 LARSQ9P2J5 1176 aaKnown RBP5.4□□□□□ -1.54
CD44-218ENST00000525469 DDX25Q9UHL0 483 aaKnown RBP5.4□□□□□ -1.54
CD44-218ENST00000525469 CCPG1Q9ULG6 757 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 NOB1Q9ULX3 412 aaKnown RBP5.4□□□□□ -1.54
CD44-218ENST00000525469 USP18Q9UMW8 372 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 FRMD4BQ9Y2L6 1034 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 ATP8A1Q9Y2Q0 1164 aa5.4□□□□□ -1.54
CD44-218ENST00000525469 MYH6P13533 1939 aa5.4□□□□□ -1.55
CD44-218ENST00000525469 GREB1LQ9C091 1923 aaPredicted RBP5.4□□□□□ -1.55
CD44-218ENST00000525469 CYP2D7A0A087X1C5 515 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 CCDC162PA2VCL2 907 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms