RNA–Protein interactions for RNA: ENST00000524356.1

PCM1-223, Transcript of pericentriolar material 1, human

TSL 2

Gene PCM1, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCM1-223	ENST00000524356	PCDHGA12	O60330	932 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	GLRX3	O76003	335 aa	Known RBP	5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	CDKL5	O76039	1030 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	ZRANB2	O95218	330 aa	Known RBP eCLIP	5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	FKBP9	O95302	570 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	SPATA31D3	P0C874	917 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	MYB	P10242	640 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	RBP3	P10745	1247 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	MAN2A1	Q16706	1144 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	ATP13A4	Q4VNC1	1196 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	MZT2A	Q6P582	158 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	PDXDC1	Q6P996	788 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	SPATA31D4	Q6ZUB0	917 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	UBE2R2	Q712K3	238 aa	Predicted RBP	5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	FKBP9P1	Q75LS8	142 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	PNMA8A	Q86V59	439 aa	Predicted RBP	5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	C2orf69	Q8N8R5	385 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	DPF1	Q92782	380 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	FAXDC2	Q96IV6	333 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	PKNOX2	Q96KN3	472 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	NUP88	Q99567	741 aa	Predicted RBP	5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	MYD88	Q99836	296 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	EIF2AK1	Q9BQI3	630 aa	Known RBP	5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	BOC	Q9BWV1	1114 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	MTG2	Q9H4K7	406 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	EMC7	Q9NPA0	242 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	USP36	Q9P275	1121 aa	Known RBP	5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	SYNPO2	Q9UMS6	1093 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	CLCA2	Q9UQC9	943 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	PCDHGA9	Q9Y5G4	932 aa	Known RBP	5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	PCDHGA8	Q9Y5G5	932 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	PCDHGA7	Q9Y5G6	932 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	PCDHGA6	Q9Y5G7	932 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	PCDHGA3	Q9Y5H0	932 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	PCDHGA2	Q9Y5H1	932 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	KDM5A	P29375	1690 aa	Known RBP	5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	SHPRH	Q149N8	1683 aa		5.08	□□□□□ -1.6
PCM1-223	ENST00000524356	ABCC5	O15440	1437 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	KIF15	Q9NS87	1388 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	CHD2	O14647	1828 aa	Known RBP	5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	CBX4	O00257	560 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	TP73	O15350	636 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	OPHN1	O60890	802 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	IL33	O95760	270 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	CFI	P05156	583 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	ZKSCAN1	P17029	563 aa	Predicted RBP	5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	CCKBR	P32239	447 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	KIF11	P52732	1056 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	ZNF267	Q14586	743 aa	Predicted RBP	5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	TMEM177	Q53S58	311 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	C1QTNF12	Q5T7M4	302 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	C16orf54	Q6UWD8	224 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	RINL	Q6ZS11	566 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	KANSL1	Q7Z3B3	1105 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	MAATS1	Q7Z4T9	603 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	SLC41A1	Q8IVJ1	513 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	UNC5B	Q8IZJ1	945 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	SDR16C5	Q8N3Y7	309 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	CLRN3	Q8NCR9	226 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	PPP1R14C	Q8TAE6	165 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	AHCYL2	Q96HN2	611 aa	Known RBP	5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	SGCZ	Q96LD1	299 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	CRB3	Q9BUF7	120 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	C1orf112	Q9NSG2	853 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	C14orf119	Q9NWQ9	140 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	SAMD15	Q9P1V8	674 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	SLC17A6	Q9P2U8	582 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	USP15	Q9Y4E8	981 aa	Predicted RBP	5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	ASXL1	Q8IXJ9	1541 aa		5.07	□□□□□ -1.6
PCM1-223	ENST00000524356	BLM	P54132	1417 aa	Predicted RBP	5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	RPGRIP1L	Q68CZ1	1315 aa		5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	SNX2	O60749	519 aa		5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	KRT37	O76014	449 aa		5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	IGKV2-30	P06310	120 aa		5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	HSPA6	P17066	643 aa		5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	LSS	P48449	732 aa		5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	KRT85	P78386	507 aa		5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	DDX10	Q13206	875 aa	Known RBP	5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	DACT2	Q5SW24	774 aa		5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	IFIT1B	Q5T764	474 aa	Known RBP	5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	ANKS6	Q68DC2	871 aa		5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	PPP4R3A	Q6IN85	833 aa		5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	KIF18B	Q86Y91	864 aa		5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	FAM43A	Q8N2R8	423 aa		5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	SLC35G2	Q8TBE7	412 aa		5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	SERINC2	Q96SA4	455 aa		5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	IL17RB	Q9NRM6	502 aa		5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	TRMT13	Q9NUP7	481 aa	Known RBP	5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	SPTLC3	Q9NUV7	552 aa		5.06	□□□□□ -1.6
PCM1-223	ENST00000524356	FIBP	O43427	364 aa		5.05	□□□□□ -1.6
PCM1-223	ENST00000524356	VDR	P11473	427 aa		5.05	□□□□□ -1.6
PCM1-223	ENST00000524356	CALR	P27797	417 aa	Known RBP	5.05	□□□□□ -1.6
PCM1-223	ENST00000524356	DDIT3	P35638	169 aa		5.05	□□□□□ -1.6
PCM1-223	ENST00000524356	CCT5	P48643	541 aa		5.05	□□□□□ -1.6
PCM1-223	ENST00000524356	TERF1	P54274	439 aa		5.05	□□□□□ -1.6
PCM1-223	ENST00000524356	CD69	Q07108	199 aa		5.05	□□□□□ -1.6
PCM1-223	ENST00000524356	SART3	Q15020	963 aa	Known RBP	5.05	□□□□□ -1.6
PCM1-223	ENST00000524356	EZH2	Q15910	746 aa	Known RBP	5.05	□□□□□ -1.6
PCM1-223	ENST00000524356	CCDC96	Q2M329	555 aa		5.05	□□□□□ -1.6
PCM1-223	ENST00000524356	RRP12	Q5JTH9	1297 aa	Known RBP	5.05	□□□□□ -1.6

Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms