RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 FOSBP53539 338 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 SMARCB1Q12824 385 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 PSMD2Q13200 908 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 SEMA3BQ13214 749 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 ZNF174Q15697 407 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 ZNF77Q15935 545 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 ENOX2Q16206 610 aaKnown RBP11.85□□□□□ -0.51
DDX41-216ENST00000513562 SPATA1Q5VX52 437 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 TXNDC8Q6A555 127 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 C1orf186Q6ZWK4 172 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 MON1AQ86VX9 555 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 NECAB1Q8N987 351 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 NSUN7Q8NE18 718 aaKnown RBP11.85□□□□□ -0.51
DDX41-216ENST00000513562 MDGA1Q8NFP4 955 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 OLIG1Q8TAK6 271 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 SPPL2BQ8TCT7 592 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 USP33Q8TEY7 942 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 MRPS31Q92665 395 aaKnown RBP11.85□□□□□ -0.51
DDX41-216ENST00000513562 ATP2A3Q93084 1043 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 GTF3C6Q969F1 213 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 TSPAN18Q96SJ8 248 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 TIPINQ9BVW5 301 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 NUSAP1Q9BXS6 441 aaKnown RBP11.85□□□□□ -0.51
DDX41-216ENST00000513562 LRWD1Q9UFC0 647 aa11.85□□□□□ -0.51
DDX41-216ENST00000513562 GCN1Q92616 2671 aaKnown RBP11.84□□□□□ -0.51
DDX41-216ENST00000513562 E9PMD0 336 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 FAM189A1O60320 539 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 TADA3O75528 432 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 ADRB2P07550 413 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 CDR1P51861 262 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 FAM160A1Q05DH4 1040 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 USP4Q13107 963 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 EML3Q32P44 896 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 C9orf57Q5W0N0 161 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 RINT1Q6NUQ1 792 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 RAB44Q7Z6P3 723 aaPredicted RBP11.84□□□□□ -0.51
DDX41-216ENST00000513562 LRRTM3Q86VH5 581 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 SYT12Q8IV01 421 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 SNX29Q8TEQ0 813 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 FNBP1Q96RU3 617 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 TMEM74BQ9NUR3 256 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 DUS2Q9NX74 493 aaKnown RBP11.84□□□□□ -0.51
DDX41-216ENST00000513562 DSEQ9UL01 958 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 MMP17Q9ULZ9 603 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 DNM3Q9UQ16 869 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 WNT6Q9Y6F9 365 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 EML5Q05BV3 1969 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 SPAG17Q6Q759 2223 aa11.84□□□□□ -0.51
DDX41-216ENST00000513562 SETXQ7Z333 2677 aaKnown RBP11.83□□□□□ -0.51
DDX41-216ENST00000513562 SFI1A8K8P3 1242 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 K7EQS6 105 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 PIRO00625 290 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 JAK2O60674 1132 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 PLS3P13797 630 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 GUCY2CP25092 1073 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 RDXP35241 583 aaKnown RBP11.83□□□□□ -0.52
DDX41-216ENST00000513562 P2RY2P41231 377 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 PTGER3P43115 390 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 MATR3P43243 847 aaKnown RBP eCLIP11.83□□□□□ -0.52
DDX41-216ENST00000513562 IFNAR2P48551 515 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 ANKRD1Q15327 319 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 CRY1Q16526 586 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 KYAT1Q16773 422 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 ME3Q16798 604 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 PEAR1Q5VY43 1037 aaPredicted RBP11.83□□□□□ -0.52
DDX41-216ENST00000513562 SLC23A3Q6PIS1 610 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 LPCAT2Q7L5N7 544 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 PDZD3Q86UT5 571 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 CHCHD4Q8N4Q1 142 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 C4orf32Q8N8J7 132 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 IGSF22Q8N9C0 903 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 ABI2Q9NYB9 513 aaPredicted RBP11.83□□□□□ -0.52
DDX41-216ENST00000513562 KCNG1Q9UIX4 513 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 STK24Q9Y6E0 443 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 CELSR3Q9NYQ7 3312 aa11.83□□□□□ -0.52
DDX41-216ENST00000513562 ANO9A1A5B4 782 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 ANTXRLA6NF34 631 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 ALDH1A2O94788 518 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 CSH1P0DML2 217 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 CSH2P0DML3 217 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 HNRNPLP14866 589 aaKnown RBP eCLIP11.82□□□□□ -0.52
DDX41-216ENST00000513562 HOXD12P35452 270 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 DPP6P42658 865 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 SMTNP53814 917 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 SEC13P55735 322 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 FAM193AP78312 1265 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 SCAPQ12770 1279 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 PDIA5Q14554 519 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 SAFBQ15424 915 aaKnown RBP eCLIP11.82□□□□□ -0.52
DDX41-216ENST00000513562 ZNF423Q2M1K9 1284 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 C2orf27AQ580R0 203 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 SPDYCQ5MJ68 293 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 TTC38Q5R3I4 469 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 JADE1Q6IE81 842 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 C19orf48Q6RUI8 117 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 TMEM92Q6UXU6 159 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 ARMCX6Q7L4S7 300 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 KCNK18Q7Z418 384 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 METTL23Q86XA0 190 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 THEM5Q8N1Q8 247 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms