RNA–Protein interactions for RNA: ENST00000498814.1

CPNE1-228, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-228ENST00000498814 TTC39CQ8N584 583 aa16.61■□□□□ 0.25
CPNE1-228ENST00000498814 AOPEPQ8N6M6 819 aa16.61■□□□□ 0.25
CPNE1-228ENST00000498814 ATAD1Q8NBU5 361 aa16.61■□□□□ 0.25
CPNE1-228ENST00000498814 NT5C1BQ96P26 610 aa16.61■□□□□ 0.25
CPNE1-228ENST00000498814 HSD3B7Q9H2F3 369 aa16.61■□□□□ 0.25
CPNE1-228ENST00000498814 CRISPLD1Q9H336 500 aa16.61■□□□□ 0.25
CPNE1-228ENST00000498814 NDST4Q9H3R1 872 aa16.61■□□□□ 0.25
CPNE1-228ENST00000498814 CRTAC1Q9NQ79 661 aa16.61■□□□□ 0.25
CPNE1-228ENST00000498814 TMLHEQ9NVH6 421 aa16.61■□□□□ 0.25
CPNE1-228ENST00000498814 GTF3C4Q9UKN8 822 aa16.61■□□□□ 0.25
CPNE1-228ENST00000498814 PCDHB5Q9Y5E4 795 aa16.61■□□□□ 0.25
CPNE1-228ENST00000498814 INSL5Q9Y5Q6 135 aa16.61■□□□□ 0.25
CPNE1-228ENST00000498814 DENND4AQ7Z401 1863 aa16.61■□□□□ 0.25
CPNE1-228ENST00000498814 TCF20Q9UGU0 1960 aaKnown RBP16.6■□□□□ 0.25
CPNE1-228ENST00000498814 PTPN1P18031 435 aaKnown RBP16.6■□□□□ 0.25
CPNE1-228ENST00000498814 MTHFRP42898 656 aa16.6■□□□□ 0.25
CPNE1-228ENST00000498814 TUFMP49411 452 aaKnown RBP16.6■□□□□ 0.25
CPNE1-228ENST00000498814 PSMC1P62191 440 aaKnown RBP16.6■□□□□ 0.25
CPNE1-228ENST00000498814 LRMPQ12912 555 aa16.6■□□□□ 0.25
CPNE1-228ENST00000498814 CUL2Q13617 745 aa16.6■□□□□ 0.25
CPNE1-228ENST00000498814 SMAD2Q15796 467 aaKnown RBP16.6■□□□□ 0.25
CPNE1-228ENST00000498814 ATAT1Q5SQI0 421 aa16.6■□□□□ 0.25
CPNE1-228ENST00000498814 GBP6Q6ZN66 633 aa16.6■□□□□ 0.25
CPNE1-228ENST00000498814 DHX40Q8IX18 779 aaKnown RBP16.6■□□□□ 0.25
CPNE1-228ENST00000498814 CRYBG2Q8N1P7 616 aa16.6■□□□□ 0.25
CPNE1-228ENST00000498814 MYCBPAPQ8TBZ2 947 aa16.6■□□□□ 0.25
CPNE1-228ENST00000498814 SMG7Q92540 1137 aaKnown RBP16.6■□□□□ 0.25
CPNE1-228ENST00000498814 FUBP3Q96I24 572 aaKnown RBP eCLIP16.6■□□□□ 0.25
CPNE1-228ENST00000498814 TNIP3Q96KP6 325 aa16.6■□□□□ 0.25
CPNE1-228ENST00000498814 RIPOR3Q96MK2 946 aa16.6■□□□□ 0.25
CPNE1-228ENST00000498814 NECTIN4Q96NY8 510 aa16.6■□□□□ 0.25
CPNE1-228ENST00000498814 INTS2Q9H0H0 1204 aaKnown RBP16.6■□□□□ 0.25
CPNE1-228ENST00000498814 ABCB6Q9NP58 842 aa16.6■□□□□ 0.25
CPNE1-228ENST00000498814 SLC27A5Q9Y2P5 690 aa16.6■□□□□ 0.25
CPNE1-228ENST00000498814 NOTCH4Q99466 2003 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 XYLBO75191 536 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 CILPO75339 1184 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 LRG1P02750 347 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 HAPLN1P10915 354 aaPredicted RBP16.59■□□□□ 0.25
CPNE1-228ENST00000498814 BMP1P13497 986 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 TBXAS1P24557 533 aaPredicted RBP16.59■□□□□ 0.25
CPNE1-228ENST00000498814 NDST1P52848 882 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 PLD1Q13393 1074 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 CBX2Q14781 532 aaPredicted RBP16.59■□□□□ 0.25
CPNE1-228ENST00000498814 IQCB1Q15051 598 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 KRT31Q15323 416 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 CFAP221Q4G0U5 840 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 C4orf50Q6ZRC1 276 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 SPATA2LQ8IUW3 424 aaPredicted RBP16.59■□□□□ 0.25
CPNE1-228ENST00000498814 B3GALNT2Q8NCR0 500 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 ANKRD20A12PQ8NF67 263 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 FEZF2Q8TBJ5 459 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 ARID3AQ99856 593 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 DPEP3Q9H4B8 488 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 CISHQ9NSE2 258 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 ABI2Q9NYB9 513 aaPredicted RBP16.59■□□□□ 0.25
CPNE1-228ENST00000498814 GCNT4Q9P109 453 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 LIMA1Q9UHB6 759 aaKnown RBP16.59■□□□□ 0.25
CPNE1-228ENST00000498814 YIPF1Q9Y548 306 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 C5orf42Q9H799 3197 aa16.59■□□□□ 0.25
CPNE1-228ENST00000498814 LRRC10BA6NIK2 292 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 CCL16O15467 120 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 IL9P15248 144 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 CD58P19256 250 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 MAGEA11P43364 429 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 ALDH1A3P47895 512 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 YWHAEP62258 255 aaKnown RBP16.58■□□□□ 0.24
CPNE1-228ENST00000498814 GCNT1Q02742 428 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 TWF1Q12792 350 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 EXOC3L4Q17RC7 722 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 CCDC142Q17RM4 750 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 MDH1BQ5I0G3 518 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 TRIM65Q6PJ69 517 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 TTC9BQ8N6N2 239 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 WHAMMQ8TF30 809 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 MYLPFQ96A32 169 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 PCED1BQ96HM7 432 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 CRACR2AQ9BSW2 395 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 NT5C1AQ9BXI3 368 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 DNAI2Q9GZS0 605 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 PIDD1Q9HB75 910 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 TAB2Q9NYJ8 693 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 HMGXB4Q9UGU5 601 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 CDH22Q9UJ99 828 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 MYH10P35580 1976 aa16.58■□□□□ 0.24
CPNE1-228ENST00000498814 BECN2A8MW95 431 aa16.57■□□□□ 0.24
CPNE1-228ENST00000498814 TPM2P07951 284 aa16.57■□□□□ 0.24
CPNE1-228ENST00000498814 TRIM21P19474 475 aaKnown RBP16.57■□□□□ 0.24
CPNE1-228ENST00000498814 SLC9A1P19634 815 aa16.57■□□□□ 0.24
CPNE1-228ENST00000498814 CDK11BP21127 795 aaKnown RBP16.57■□□□□ 0.24
CPNE1-228ENST00000498814 PON1P27169 355 aa16.57■□□□□ 0.24
CPNE1-228ENST00000498814 CDR1P51861 262 aa16.57■□□□□ 0.24
CPNE1-228ENST00000498814 MGAT5BQ3V5L5 792 aa16.57■□□□□ 0.24
CPNE1-228ENST00000498814 TJAP1Q5JTD0 557 aa16.57■□□□□ 0.24
CPNE1-228ENST00000498814 PHLDB3Q6NSJ2 640 aa16.57■□□□□ 0.24
CPNE1-228ENST00000498814 ACOT1Q86TX2 421 aa16.57■□□□□ 0.24
CPNE1-228ENST00000498814 ARHGEF19Q8IW93 802 aa16.57■□□□□ 0.24
CPNE1-228ENST00000498814 PPM1KQ8N3J5 372 aa16.57■□□□□ 0.24
CPNE1-228ENST00000498814 UBR7Q8N806 425 aa16.57■□□□□ 0.24
CPNE1-228ENST00000498814 TWNKQ96RR1 684 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms