RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 YWHAEP62258 255 aaKnown RBP12.89□□□□□ -0.35
HDAC6-230ENST00000488543 MESDQ14696 234 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 ZNF394Q53GI3 561 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 C2CD6Q53TS8 623 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 FAM26DQ5JW98 314 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 SLC39A5Q6ZMH5 540 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 USP38Q8NB14 1042 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 ACTRT1Q8TDG2 376 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 HPDLQ96IR7 371 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 CAPS2Q9BXY5 557 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 FAM105AQ9NUU6 356 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 TUBGCP4Q9UGJ1 667 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 TMEM59LQ9UK28 342 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 PPEF2O14830 753 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 CEP104O60308 925 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 MYBL1P10243 752 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 NSFP46459 744 aaKnown RBP12.89□□□□□ -0.35
HDAC6-230ENST00000488543 YARSP54577 528 aaKnown RBP12.89□□□□□ -0.35
HDAC6-230ENST00000488543 RAD23BP54727 409 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 RBP5P82980 135 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 GPNMBQ14956 572 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 RTN4RL1Q86UN2 441 aaPredicted RBP12.89□□□□□ -0.35
HDAC6-230ENST00000488543 PACS2Q86VP3 889 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 RNF169Q8NCN4 708 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 OR2W6PQ8NHA6 318 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 ALG3Q92685 438 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 CD101Q93033 1021 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 ARMC5Q96C12 935 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 TWNKQ96RR1 684 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 RPS6KC1Q96S38 1066 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 RUFY1Q96T51 708 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 ADAM2Q99965 735 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 GOLGA2P5Q9HBQ8 144 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 CNTN3Q9P232 1028 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 CACNG4Q9UBN1 327 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 HMGXB4Q9UGU5 601 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 SMIM28A0A1B0GU29 152 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 HSF2BPO75031 334 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 COMTP21964 271 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 MARCKSL1P49006 195 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 PHLDB2Q86SQ0 1253 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 BCAS4Q8TDM0 211 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 PIK3R5Q8WYR1 880 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 KRT35Q92764 455 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 TRIM11Q96F44 468 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 SH3GL2Q99962 352 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 C11orf70Q9BRQ4 267 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 TRIM7Q9C029 511 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 ELOVL4Q9GZR5 314 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 CYP3A43Q9HB55 503 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 PCDHGC3Q9UN70 934 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 SHOX2O60902 331 aaPredicted RBP12.88□□□□□ -0.35
HDAC6-230ENST00000488543 CILPO75339 1184 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 IGFBP6P24592 240 aaPredicted RBP12.88□□□□□ -0.35
HDAC6-230ENST00000488543 CDH5P33151 784 aaPredicted RBP12.88□□□□□ -0.35
HDAC6-230ENST00000488543 TLE2Q04725 743 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 C1QBPQ07021 282 aaKnown RBP12.88□□□□□ -0.35
HDAC6-230ENST00000488543 TRIM60Q495X7 471 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 XKR4Q5GH76 650 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 MMS22LQ6ZRQ5 1243 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 WDTC1Q8N5D0 677 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 SLC4A11Q8NBS3 891 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 VCPIP1Q96JH7 1222 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 CENPHQ9H3R5 247 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 MIOSQ9NXC5 875 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 ADAM22Q9P0K1 906 aa12.88□□□□□ -0.35
HDAC6-230ENST00000488543 NBNO60934 754 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 LSM8O95777 96 aaKnown RBP12.87□□□□□ -0.35
HDAC6-230ENST00000488543 RPLP2P05387 115 aaKnown RBP12.87□□□□□ -0.35
HDAC6-230ENST00000488543 PAEPP09466 180 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 GUCY1A3Q02108 690 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 SOX4Q06945 474 aaPredicted RBP12.87□□□□□ -0.35
HDAC6-230ENST00000488543 NNTQ13423 1086 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 LRRC8DQ7L1W4 858 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 GSTCDQ8NEC7 633 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 SCLYQ96I15 445 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 PAWRQ96IZ0 340 aaKnown RBP12.87□□□□□ -0.35
HDAC6-230ENST00000488543 GAD1Q99259 594 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.87□□□□□ -0.359e-8■□□□□ 11
HDAC6-230ENST00000488543 CHST12Q9NRB3 414 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 TTC7AQ9ULT0 858 aaPredicted RBP12.87□□□□□ -0.35
HDAC6-230ENST00000488543 MIF4GDA9UHW6 222 aaKnown RBP12.87□□□□□ -0.35
HDAC6-230ENST00000488543 PGRMC1O00264 195 aaKnown RBP12.87□□□□□ -0.35
HDAC6-230ENST00000488543 PTGESO14684 152 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 ITGA4P13612 1032 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 MMP8P22894 467 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 MLH1P40692 756 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 GJA8P48165 433 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 LIG3P49916 1009 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 PEX5P50542 639 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 CCL23P55773 120 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 INCA1Q0VD86 236 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 FAAP100Q0VG06 881 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 ORC1Q13415 861 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 DSC3Q14574 896 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 PLEKHA7Q6IQ23 1121 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 DENND1BQ6P3S1 775 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 AGMOQ6ZNB7 445 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 C1orf131Q8NDD1 294 aaKnown RBP12.87□□□□□ -0.35
HDAC6-230ENST00000488543 PPP1R12CQ9BZL4 782 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms