RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 GSCP56915 257 aaPredicted RBP18.9■□□□□ 0.62
VIM-206ENST00000487938 ORC1Q13415 861 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 JOSD2Q8TAC2 188 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 MAGEC3Q8TD91 643 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 TTC25Q96NG3 672 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 DDX56Q9NY93 547 aaKnown RBP18.9■□□□□ 0.62
VIM-206ENST00000487938 GRID1Q9ULK0 1009 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 SIP14410 1827 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 ALOX15BO15296 676 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 ASMTLO95671 621 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 RPA3P35244 121 aaPredicted RBP18.9■□□□□ 0.62
VIM-206ENST00000487938 AP3M2P53677 418 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 GDF10P55107 478 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 LAMTOR4Q0VGL1 99 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 CCDC142Q17RM4 750 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 ZNF699Q32M78 642 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 TREML2Q5T2D2 321 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 TRIM50Q86XT4 487 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 DHX37Q8IY37 1157 aaKnown RBP18.9■□□□□ 0.62
VIM-206ENST00000487938 KIAA0319LQ8IZA0 1049 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 ARFGAP1Q8N6T3 406 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 CYTH4Q9UIA0 394 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 STK38LQ9Y2H1 464 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 C3orf70A6NLC5 250 aaPredicted RBP18.89■□□□□ 0.61
VIM-206ENST00000487938 OGTO15294 1046 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 PRKCBP05771 671 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 ITGAVP06756 1048 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 GJB1P08034 283 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 EIF4BP23588 611 aaKnown RBP18.89■□□□□ 0.61
VIM-206ENST00000487938 IL1R2P27930 398 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 CDH8P55286 799 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 PTPN20Q4JDL3 420 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 FAM160B1Q5W0V3 765 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 CENPUQ71F23 418 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 GBP7Q8N8V2 638 aaPredicted RBP18.89■□□□□ 0.61
VIM-206ENST00000487938 CHST13Q8NET6 341 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 DENND1AQ8TEH3 1009 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 PRCCQ92733 491 aaPredicted RBP18.89■□□□□ 0.61
VIM-206ENST00000487938 SLCO1B3Q9NPD5 702 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 BTBD7Q9P203 1132 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 CPSF3Q9UKF6 684 aaKnown RBP18.89■□□□□ 0.61
VIM-206ENST00000487938 SOWAHBA6NEL2 793 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 A8MUI8 341 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 KRT19P08727 400 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 KRT16P08779 473 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 KRT3P12035 628 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 SLC8A1P32418 973 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 ASPAP45381 313 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 LACTBP83111 547 aaPredicted RBP18.89■□□□□ 0.61
VIM-206ENST00000487938 OTUD4Q01804 1114 aaKnown RBP18.89■□□□□ 0.61
VIM-206ENST00000487938 ANKRD22Q5VYY1 191 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 EMC1Q8N766 993 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 CEP120Q8N960 986 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 ANKLE1Q8NAG6 615 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 ACTL9Q8TC94 416 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 NKD2Q969F2 451 aaPredicted RBP18.89■□□□□ 0.61
VIM-206ENST00000487938 ZBTB10Q96DT7 871 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 SMC6Q96SB8 1091 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 ZNF518BQ9C0D4 1074 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 L3MBTL1Q9Y468 752 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 CEP83Q9Y592 693 aa18.89■□□□□ 0.61
VIM-206ENST00000487938 FZD9O00144 591 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 CST8O60676 142 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 CD48P09326 243 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 HOXC6P09630 235 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 SSTR1P30872 391 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 EFNA5P52803 228 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 GPX6P59796 221 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 NR1H3Q13133 447 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 EFTUD2Q15029 972 aaKnown RBP eCLIP18.88■□□□□ 0.611e-6■■■■■ 65.9
VIM-206ENST00000487938 SLC1A5Q15758 541 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 FNBP1LQ5T0N5 605 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 FAM182AQ5T1J6 154 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 RNF43Q68DV7 783 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 DLK2Q6UY11 383 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 TDRPQ86YL5 185 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 SLC35B2Q8TB61 432 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 SEPT1Q8WYJ6 367 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 NCAPGQ9BPX3 1015 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 PLCD4Q9BRC7 762 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 XYLT2Q9H1B5 865 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 R3HDMLQ9H3Y0 253 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 YY1AP1Q9H869 796 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 PCDH9Q9HC56 1237 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 PCSK1NQ9UHG2 260 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 PHTF1Q9UMS5 762 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 PCDHGC3Q9UN70 934 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 EZRP15311 586 aaKnown RBP18.88■□□□□ 0.61
VIM-206ENST00000487938 CA4P22748 312 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 TAP1Q03518 808 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 ZNF268Q14587 947 aaPredicted RBP18.88■□□□□ 0.61
VIM-206ENST00000487938 MAPK6Q16659 721 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 MSS51Q4VC12 460 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 NCAPG2Q86XI2 1143 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 RHPN2Q8IUC4 686 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 TRPM4Q8TD43 1214 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 MAK16Q9BXY0 300 aaKnown RBP18.88■□□□□ 0.61
VIM-206ENST00000487938 MCM8Q9UJA3 840 aa18.88■□□□□ 0.61
VIM-206ENST00000487938 ABLIM1O14639 778 aa18.87■□□□□ 0.61
VIM-206ENST00000487938 B4GALT5O43286 388 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms