RNA–Protein interactions for RNA: ENST00000483922.1

UBR4-213, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 5

Gene UBR4, Length 543 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-213	ENST00000483922	TDP1	Q9NUW8	608 aa		13.94	□□□□□ -0.18
UBR4-213	ENST00000483922	EBF1	Q9UH73	591 aa		13.94	□□□□□ -0.18
UBR4-213	ENST00000483922	FAM208B	Q5VWN6	2430 aa		13.93	□□□□□ -0.18
UBR4-213	ENST00000483922	CAVIN2	O95810	425 aa		13.93	□□□□□ -0.18
UBR4-213	ENST00000483922	ACOT2	P49753	483 aa		13.93	□□□□□ -0.18
UBR4-213	ENST00000483922	LIG4	P49917	911 aa		13.93	□□□□□ -0.18
UBR4-213	ENST00000483922	CREB5	Q02930	508 aa		13.93	□□□□□ -0.18
UBR4-213	ENST00000483922	DMC1	Q14565	340 aa		13.93	□□□□□ -0.18
UBR4-213	ENST00000483922	SYT13	Q7L8C5	426 aa		13.93	□□□□□ -0.18
UBR4-213	ENST00000483922	MON1A	Q86VX9	555 aa		13.93	□□□□□ -0.18
UBR4-213	ENST00000483922	BICD1	Q96G01	975 aa		13.93	□□□□□ -0.18
UBR4-213	ENST00000483922	P2RY13	Q9BPV8	354 aa		13.93	□□□□□ -0.18
UBR4-213	ENST00000483922	REEP2	Q9BRK0	252 aa		13.93	□□□□□ -0.18
UBR4-213	ENST00000483922	PI4K2A	Q9BTU6	479 aa		13.93	□□□□□ -0.18
UBR4-213	ENST00000483922	EDEM2	Q9BV94	578 aa		13.93	□□□□□ -0.18
UBR4-213	ENST00000483922	LINC00597	Q9H2U6	94 aa		13.93	□□□□□ -0.18
UBR4-213	ENST00000483922	ECT2	Q9H8V3	914 aa		13.93	□□□□□ -0.18
UBR4-213	ENST00000483922	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.93	□□□□□ -0.18
UBR4-213	ENST00000483922	NOL7	Q9UMY1	257 aa	Known RBP	13.93	□□□□□ -0.18
UBR4-213	ENST00000483922	CHRM1	P11229	460 aa	Predicted RBP	13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	HNRNPL	P14866	589 aa	Known RBP eCLIP	13.92	□□□□□ -0.18	9e-7	■■■■□ 24.9
UBR4-213	ENST00000483922	DRD1	P21728	446 aa		13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	BCKDHB	P21953	392 aa		13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	NOVA1	P51513	510 aa	Known RBP	13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	ZXDB	P98169	803 aa		13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	ATP2C1	P98194	919 aa	Predicted RBP	13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	PTPA	Q15257	358 aa		13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	DDR2	Q16832	855 aa		13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	GAB4	Q2WGN9	574 aa		13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	EFCAB13	Q8IY85	973 aa		13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	ABCA7	Q8IZY2	2146 aa		13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	ZSWIM2	Q8NEG5	633 aa		13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	SPPL2B	Q8TCT7	592 aa		13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	FAM84A	Q96KN4	292 aa		13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	TSPAN18	Q96SJ8	248 aa		13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	PKMYT1	Q99640	499 aa		13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	PYM1	Q9BRP8	204 aa	Known RBP	13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	RAB34	Q9BZG1	259 aa		13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	CCSER1	Q9C0I3	900 aa		13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	BLOC1S4	Q9NUP1	217 aa		13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	ABI2	Q9NYB9	513 aa	Predicted RBP	13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	OBSL1	O75147	1896 aa		13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	FREM2	Q5SZK8	3169 aa		13.92	□□□□□ -0.18
UBR4-213	ENST00000483922	MYO16	Q9Y6X6	1858 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	MYH11	P35749	1972 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922		K7EQS6	105 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	LAD1	O00515	517 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	HNRNPDL	O14979	420 aa	Known RBP	13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	XPOT	O43592	962 aa	Known RBP	13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	HCRT	O43612	131 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	AVPR1A	P37288	418 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	ZNF131	P52739	623 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	IRX4	P78413	519 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	MESP2	Q0VG99	397 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	FOXC1	Q12948	553 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	GNL2	Q13823	731 aa	Known RBP	13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	ZNF268	Q14587	947 aa	Predicted RBP	13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	TMEM132D	Q14C87	1099 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	VEPH1	Q14D04	833 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	ZNF77	Q15935	545 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	EML3	Q32P44	896 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	SH3PXD2A	Q5TCZ1	1133 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	SFTPA1	Q8IWL2	248 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	CD302	Q8IX05	232 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	FRMD1	Q8N878	549 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	CXorf38	Q8TB03	319 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	GATA6	Q92908	595 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	KIF2C	Q99661	725 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	MSTO1	Q9BUK6	570 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	TPSD1	Q9BZJ3	242 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	DPP3	Q9NY33	737 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	GCNT4	Q9P109	453 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	KCNG1	Q9UIX4	513 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	MAGED2	Q9UNF1	606 aa	Predicted RBP	13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	DERA	Q9Y315	318 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	WNT6	Q9Y6F9	365 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	STYXL1	Q9Y6J8	313 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	KIAA1549L	Q6ZVL6	1849 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	PKD1L2	Q7Z442	2459 aa		13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	SMG1	Q96Q15	3661 aa	Known RBP	13.91	□□□□□ -0.18
UBR4-213	ENST00000483922	VWA3A	A6NCI4	1184 aa		13.9	□□□□□ -0.18
UBR4-213	ENST00000483922	APBB3	O95704	486 aa		13.9	□□□□□ -0.18
UBR4-213	ENST00000483922	PAX3	P23760	479 aa		13.9	□□□□□ -0.18
UBR4-213	ENST00000483922	CYP2F1	P24903	491 aa		13.9	□□□□□ -0.18
UBR4-213	ENST00000483922	DDX6	P26196	483 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
UBR4-213	ENST00000483922	ADSS	P30520	456 aa		13.9	□□□□□ -0.18
UBR4-213	ENST00000483922	TAF6	P49848	677 aa		13.9	□□□□□ -0.18
UBR4-213	ENST00000483922	GTF2B	Q00403	316 aa		13.9	□□□□□ -0.18
UBR4-213	ENST00000483922	ZNF252P-AS1	Q0IIN9	211 aa		13.9	□□□□□ -0.18
UBR4-213	ENST00000483922	BFSP1	Q12934	665 aa		13.9	□□□□□ -0.18
UBR4-213	ENST00000483922	MTF1	Q14872	753 aa		13.9	□□□□□ -0.18
UBR4-213	ENST00000483922	PDGFRL	Q15198	375 aa		13.9	□□□□□ -0.18
UBR4-213	ENST00000483922	TAF12	Q16514	161 aa		13.9	□□□□□ -0.18
UBR4-213	ENST00000483922	KYAT1	Q16773	422 aa		13.9	□□□□□ -0.18
UBR4-213	ENST00000483922	PMS2CL	Q68D20	193 aa		13.9	□□□□□ -0.18
UBR4-213	ENST00000483922	OSTM1	Q86WC4	334 aa		13.9	□□□□□ -0.18
UBR4-213	ENST00000483922	MYCT1	Q8N699	235 aa		13.9	□□□□□ -0.18
UBR4-213	ENST00000483922	C2orf15	Q8WU43	125 aa	Known RBP	13.9	□□□□□ -0.18
UBR4-213	ENST00000483922	OSCP1	Q8WVF1	389 aa		13.9	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms