RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 ZNF419Q96HQ0 510 aaPredicted RBP8.8□□□□□ -1
USP54-211ENST00000474929 SUSD3Q96L08 255 aa8.8□□□□□ -1
USP54-211ENST00000474929 ZNF578Q96N58 590 aaPredicted RBP8.8□□□□□ -1
USP54-211ENST00000474929 TMEM206Q9H813 350 aa8.8□□□□□ -1
USP54-211ENST00000474929 SLC12A7Q9Y666 1083 aa8.8□□□□□ -1
USP54-211ENST00000474929 PHLPP2Q6ZVD8 1323 aa8.8□□□□□ -1
USP54-211ENST00000474929 RELNP78509 3460 aa8.79□□□□□ -1
USP54-211ENST00000474929 MYMKA6NI61 221 aa8.79□□□□□ -1
USP54-211ENST00000474929 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.79□□□□□ -1
USP54-211ENST00000474929 I3L4J1 428 aa8.79□□□□□ -1
USP54-211ENST00000474929 K7EQS6 105 aa8.79□□□□□ -1
USP54-211ENST00000474929 B4GALT5O43286 388 aa8.79□□□□□ -1
USP54-211ENST00000474929 PCDHGA12O60330 932 aa8.79□□□□□ -1
USP54-211ENST00000474929 APODP05090 189 aa8.79□□□□□ -1
USP54-211ENST00000474929 CHRM1P11229 460 aaPredicted RBP8.79□□□□□ -1
USP54-211ENST00000474929 U2AF2P26368 475 aaKnown RBP eCLIP8.79□□□□□ -1
USP54-211ENST00000474929 RPL9P32969 192 aaKnown RBP8.79□□□□□ -1
USP54-211ENST00000474929 MCM4P33991 863 aa8.79□□□□□ -1
USP54-211ENST00000474929 CCT8P50990 548 aa8.79□□□□□ -1
USP54-211ENST00000474929 YARSP54577 528 aaKnown RBP8.79□□□□□ -1
USP54-211ENST00000474929 INHBCP55103 352 aa8.79□□□□□ -1
USP54-211ENST00000474929 NPEPPSP55786 919 aa8.79□□□□□ -1
USP54-211ENST00000474929 FAM160A1Q05DH4 1040 aa8.79□□□□□ -1
USP54-211ENST00000474929 GPR17Q13304 367 aa8.79□□□□□ -1
USP54-211ENST00000474929 CAPSQ13938 189 aa8.79□□□□□ -1
USP54-211ENST00000474929 MYBPC2Q14324 1141 aa8.79□□□□□ -1
USP54-211ENST00000474929 NOLC1Q14978 699 aaKnown RBP eCLIP8.79□□□□□ -1
USP54-211ENST00000474929 FAM187BQ17R55 369 aa8.79□□□□□ -1
USP54-211ENST00000474929 CCDC157Q569K6 752 aa8.79□□□□□ -1
USP54-211ENST00000474929 TYW1BQ6NUM6 668 aa8.79□□□□□ -1
USP54-211ENST00000474929 SYNE3Q6ZMZ3 975 aa8.79□□□□□ -1
USP54-211ENST00000474929 NUDT18Q6ZVK8 323 aa8.79□□□□□ -1
USP54-211ENST00000474929 GPIHBP1Q8IV16 184 aa8.79□□□□□ -1
USP54-211ENST00000474929 DHX40Q8IX18 779 aaKnown RBP8.79□□□□□ -1
USP54-211ENST00000474929 CCDC82Q8N4S0 544 aa8.79□□□□□ -1
USP54-211ENST00000474929 ALLCQ8N6M5 410 aa8.79□□□□□ -1
USP54-211ENST00000474929 KIAA1958Q8N8K9 716 aa8.79□□□□□ -1
USP54-211ENST00000474929 IL17RCQ8NAC3 791 aa8.79□□□□□ -1
USP54-211ENST00000474929 C3orf58Q8NDZ4 430 aa8.79□□□□□ -1
USP54-211ENST00000474929 KCNE4Q8WWG9 221 aa8.79□□□□□ -1
USP54-211ENST00000474929 MRPS31Q92665 395 aaKnown RBP8.79□□□□□ -1
USP54-211ENST00000474929 USP13Q92995 863 aaPredicted RBP8.79□□□□□ -1
USP54-211ENST00000474929 CCDC136Q96JN2 1154 aa8.79□□□□□ -1
USP54-211ENST00000474929 C22orf23Q9BZE7 217 aa8.79□□□□□ -1
USP54-211ENST00000474929 C2orf40Q9H1Z8 148 aa8.79□□□□□ -1
USP54-211ENST00000474929 CALCOCO1Q9P1Z2 691 aa8.79□□□□□ -1
USP54-211ENST00000474929 PCDHB8Q9UN66 801 aa8.79□□□□□ -1
USP54-211ENST00000474929 FNDC3AQ9Y2H6 1198 aaKnown RBP8.79□□□□□ -1
USP54-211ENST00000474929 HELZP42694 1942 aaKnown RBP8.79□□□□□ -1
USP54-211ENST00000474929 SGK1O00141 431 aa8.78□□□□□ -1
USP54-211ENST00000474929 DFNA5O60443 496 aa8.78□□□□□ -1
USP54-211ENST00000474929 DGAT1O75907 488 aa8.78□□□□□ -1
USP54-211ENST00000474929 P4HBP07237 508 aaKnown RBP8.78□□□□□ -1
USP54-211ENST00000474929 YWHABP31946 246 aaKnown RBP8.78□□□□□ -1
USP54-211ENST00000474929 LIFRP42702 1097 aa8.78□□□□□ -1
USP54-211ENST00000474929 PDE6CP51160 858 aa8.78□□□□□ -1
USP54-211ENST00000474929 DUSP4Q13115 394 aa8.78□□□□□ -1
USP54-211ENST00000474929 TARDBPQ13148 414 aaKnown RBP eCLIP8.78□□□□□ -1
USP54-211ENST00000474929 ILKQ13418 452 aa8.78□□□□□ -1
USP54-211ENST00000474929 SF3A1Q15459 793 aaKnown RBP8.78□□□□□ -1
USP54-211ENST00000474929 HLA-BQ31612 363 aa8.78□□□□□ -1
USP54-211ENST00000474929 B3GNT9Q6UX72 402 aa8.78□□□□□ -1
USP54-211ENST00000474929 USP37Q86T82 979 aa8.78□□□□□ -1
USP54-211ENST00000474929 C4orf19Q8IY42 314 aa8.78□□□□□ -1
USP54-211ENST00000474929 FAM26EQ8N5C1 309 aa8.78□□□□□ -1
USP54-211ENST00000474929 FRMD1Q8N878 549 aa8.78□□□□□ -1
USP54-211ENST00000474929 FANCBQ8NB91 859 aa8.78□□□□□ -1
USP54-211ENST00000474929 DNASE2BQ8WZ79 361 aa8.78□□□□□ -1
USP54-211ENST00000474929 DDX12PQ92771 950 aa8.78□□□□□ -1
USP54-211ENST00000474929 CCDC97Q96F63 343 aaPredicted RBP8.78□□□□□ -1
USP54-211ENST00000474929 CCDC43Q96MW1 224 aaKnown RBP8.78□□□□□ -1
USP54-211ENST00000474929 SLC46A2Q9BY10 475 aa8.78□□□□□ -1
USP54-211ENST00000474929 ZMYND12Q9H0C1 365 aa8.78□□□□□ -1
USP54-211ENST00000474929 SMG9Q9H0W8 520 aaKnown RBP8.78□□□□□ -1
USP54-211ENST00000474929 CPNE5Q9HCH3 593 aa8.78□□□□□ -1
USP54-211ENST00000474929 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.78□□□□□ -1
USP54-211ENST00000474929 NBPF19A0A087WUL8 3843 aa8.78□□□□□ -1
USP54-211ENST00000474929 ZNF638Q14966 1978 aaKnown RBP8.77□□□□□ -1
USP54-211ENST00000474929 E7EWF7 191 aa8.77□□□□□ -1.01
USP54-211ENST00000474929 LAD1O00515 517 aa8.77□□□□□ -1.01
USP54-211ENST00000474929 BCAT2O15382 392 aaPredicted RBP8.77□□□□□ -1.01
USP54-211ENST00000474929 PAPSS1O43252 624 aaPredicted RBP8.77□□□□□ -1.01
USP54-211ENST00000474929 SUV39H1O43463 412 aa8.77□□□□□ -1.01
USP54-211ENST00000474929 OAZ2O95190 189 aa8.77□□□□□ -1.01
USP54-211ENST00000474929 CYP21A2P08686 494 aa8.77□□□□□ -1.01
USP54-211ENST00000474929 TCF3P15923 654 aa8.77□□□□□ -1.01
USP54-211ENST00000474929 ELAVL4P26378 380 aaKnown RBP8.77□□□□□ -1.01
USP54-211ENST00000474929 TIE1P35590 1138 aa8.77□□□□□ -1.01
USP54-211ENST00000474929 ERVPABLB-1P60509 514 aa8.77□□□□□ -1.01
USP54-211ENST00000474929 TEAD4Q15561 434 aa8.77□□□□□ -1.01
USP54-211ENST00000474929 ZNF77Q15935 545 aa8.77□□□□□ -1.01
USP54-211ENST00000474929 EML3Q32P44 896 aa8.77□□□□□ -1.01
USP54-211ENST00000474929 Q4G0T1 1027 aa8.77□□□□□ -1.01
USP54-211ENST00000474929 XKR9Q5GH70 373 aa8.77□□□□□ -1.01
USP54-211ENST00000474929 GLRA4Q5JXX5 417 aa8.77□□□□□ -1.01
USP54-211ENST00000474929 HES3Q5TGS1 186 aa8.77□□□□□ -1.01
USP54-211ENST00000474929 NAIF1Q69YI7 327 aaPredicted RBP8.77□□□□□ -1.01
USP54-211ENST00000474929 CENPPQ6IPU0 288 aa8.77□□□□□ -1.01
USP54-211ENST00000474929 PADI6Q6TGC4 694 aa8.77□□□□□ -1.01
USP54-211ENST00000474929 CD300LGQ6UXG3 332 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms