RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 KCNH7Q9NS40 1196 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 BARHL2Q9NY43 387 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 SLC9A2Q9UBY0 812 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 TUBE1Q9UJT0 475 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 MTUS1Q9ULD2 1270 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 NFASCO94856 1347 aa8.24□□□□□ -1.09
USP54-208ENST00000461520 KLF18A0A0U1RQI7 1052 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 CCDC196A0A1B0GTZ2 297 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.23□□□□□ -1.09
USP54-208ENST00000461520 SMCO2A6NFE2 343 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 RRN3P2A6NIE6 340 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 PRRG2O14669 202 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 CHRNA1P02708 482 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 ASGR2P07307 311 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 PLS3P13797 630 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 MARK3P27448 753 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 ADCY7P51828 1080 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 MGAT3Q09327 533 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 NCAPHQ15003 741 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 CEP55Q53EZ4 464 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 TMEM31Q5JXX7 168 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 MARCH8Q5T0T0 291 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 MBLAC2Q68D91 279 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 CABP7Q86V35 215 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 SKAP1Q86WV1 359 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 ZDHHC14Q8IZN3 488 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 LINC01356Q8N9X3 169 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 USP33Q8TEY7 942 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 ALG3Q92685 438 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 RELTQ969Z4 430 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 YME1L1Q96TA2 773 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 C17orf80Q9BSJ5 609 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 ANO3Q9BYT9 981 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 AZI2Q9H6S1 392 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 CAPN10Q9HC96 672 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 SQORQ9Y6N5 450 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 COL4A6Q14031 1691 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 MUC6Q6W4X9 2439 aa8.23□□□□□ -1.09
USP54-208ENST00000461520 SIP14410 1827 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 FFAR3O14843 346 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 ARP10275 920 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 GHRP10912 638 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 INSRRP14616 1297 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 SREBF1P36956 1147 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 SLC26A2P50443 739 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 METAP2P50579 478 aaKnown RBP eCLIP8.22□□□□□ -1.09
USP54-208ENST00000461520 STAT5BP51692 787 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 ACTR2P61160 394 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 PFKFB3Q16875 520 aaPredicted RBP8.22□□□□□ -1.09
USP54-208ENST00000461520 EPC2Q52LR7 807 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 MCTP2Q6DN12 878 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 GTF2IRD2BQ6EKJ0 949 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 C6orf15Q6UXA7 325 aaPredicted RBP8.22□□□□□ -1.09
USP54-208ENST00000461520 TSHZ1Q6ZSZ6 1077 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 NIPA1Q7RTP0 329 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 PLPPR4Q7Z2D5 763 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 GTF2IRD2Q86UP8 949 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 FBXL16Q8N461 479 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 CYP2W1Q8TAV3 490 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 DNAJB3Q8WWF6 145 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 PGBD1Q96JS3 809 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 PCYT2Q99447 389 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 AGO4Q9HCK5 861 aaKnown RBP8.22□□□□□ -1.09
USP54-208ENST00000461520 NCANO14594 1321 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 NID2Q14112 1375 aa8.22□□□□□ -1.09
USP54-208ENST00000461520 PIEZO1Q92508 2521 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 MICAL3Q7RTP6 2002 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 IGKV6D-21A0A0A0MT36 114 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.21□□□□□ -1.1
USP54-208ENST00000461520 ESYT2A0FGR8 921 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 H3BNC9 293 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 M0QZ92 97 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 ENPP3O14638 875 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 PRPF3O43395 683 aaKnown RBP8.21□□□□□ -1.1
USP54-208ENST00000461520 NPHS1O60500 1241 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 PLA2G1BP04054 148 aaKnown RBP8.21□□□□□ -1.1
USP54-208ENST00000461520 FUCA1P04066 466 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 SSBP05455 408 aaKnown RBP eCLIP8.21□□□□□ -1.1
USP54-208ENST00000461520 CYP3A4P08684 503 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 SCG2P13521 617 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 PMLP29590 882 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 HSPA4P34932 840 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 ZNF143P52747 638 aaPredicted RBP8.21□□□□□ -1.1
USP54-208ENST00000461520 IGBP1P78318 339 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 MRPS6P82932 125 aaKnown RBP8.21□□□□□ -1.1
USP54-208ENST00000461520 ITGB3BPQ13352 177 aaPredicted RBP8.21□□□□□ -1.1
USP54-208ENST00000461520 GPM6BQ13491 265 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 LPIN1Q14693 890 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 PLCB4Q15147 1175 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 PTPROQ16827 1216 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 FBXO47Q5MNV8 452 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 LARP1BQ659C4 914 aaKnown RBP8.21□□□□□ -1.1
USP54-208ENST00000461520 POMZP3Q6PJE2 187 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 BLOC1S2Q6QNY1 142 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 FAM43BQ6ZT52 329 aaPredicted RBP8.21□□□□□ -1.1
USP54-208ENST00000461520 Q6ZUG5 572 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 ADGRG2Q8IZP9 1017 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 NME8Q8N427 588 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 CCDC12Q8WUD4 166 aaPredicted RBP8.21□□□□□ -1.1
USP54-208ENST00000461520 MRPL38Q96DV4 380 aaKnown RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms