RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 ZNF606Q8WXB4 792 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 NKD2Q969F2 451 aaPredicted RBP17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 TMEM143Q96AN5 459 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 MS4A4AQ96JQ5 239 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 MSTO1Q9BUK6 570 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 PORCNQ9H237 461 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 R3HDMLQ9H3Y0 253 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 PPCSQ9HAB8 311 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 TRIM33Q9UPN9 1127 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 SHOC2Q9UQ13 582 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 C15orf41Q9Y2V0 281 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 IVNS1ABPQ9Y6Y0 642 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 hCG_1818297A0A087WSY0 165 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 ALOX15BO15296 676 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 SPAG7O75391 227 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 LSM8O95777 96 aaKnown RBP17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 CALB1P05937 261 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 ETS1P14921 441 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 CCND1P24385 295 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 GPS1Q13098 491 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 SPARCL1Q14515 664 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 PKN2Q16513 984 aaKnown RBP17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 CST9Q5W186 159 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 FBF1Q8TES7 1133 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 PRCCQ92733 491 aaPredicted RBP17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 MAF1Q9H063 256 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 DHX33Q9H6R0 707 aaKnown RBP17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 FBXO40Q9UH90 709 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 L3MBTL1Q9Y468 752 aa17.28■□□□□ 0.36
CLCNKA-203ENST00000439316 MYH9P35579 1960 aaKnown RBP17.27■□□□□ 0.36
CLCNKA-203ENST00000439316 A8MUI8 341 aa17.27■□□□□ 0.36
CLCNKA-203ENST00000439316 SPATA31C2B4DYI2 1134 aa17.27■□□□□ 0.36
CLCNKA-203ENST00000439316 NDC80O14777 642 aa17.27■□□□□ 0.36
CLCNKA-203ENST00000439316 ITGBL1O95965 494 aaPredicted RBP17.27■□□□□ 0.36
CLCNKA-203ENST00000439316 CYP2C8P10632 490 aa17.27■□□□□ 0.36
CLCNKA-203ENST00000439316 ARL2P36404 184 aa17.27■□□□□ 0.36
CLCNKA-203ENST00000439316 YARSP54577 528 aaKnown RBP17.27■□□□□ 0.36
CLCNKA-203ENST00000439316 OGDHQ02218 1023 aa17.27■□□□□ 0.36
CLCNKA-203ENST00000439316 CNTN2Q02246 1040 aa17.27■□□□□ 0.36
CLCNKA-203ENST00000439316 MYO1EQ12965 1108 aa17.27■□□□□ 0.36
CLCNKA-203ENST00000439316 NCOA4Q13772 614 aa17.27■□□□□ 0.36
CLCNKA-203ENST00000439316 PDK4Q16654 411 aa17.27■□□□□ 0.36
CLCNKA-203ENST00000439316 Q3C1V9 767 aa17.27■□□□□ 0.36
CLCNKA-203ENST00000439316 DEPTORQ8TB45 409 aa17.27■□□□□ 0.36
CLCNKA-203ENST00000439316 TARS2Q9BW92 718 aaKnown RBP17.27■□□□□ 0.36
CLCNKA-203ENST00000439316 PCDH9Q9HC56 1237 aa17.27■□□□□ 0.36
CLCNKA-203ENST00000439316 TXLNGQ9NUQ3 528 aa17.27■□□□□ 0.36
CLCNKA-203ENST00000439316 NOP53Q9NZM5 478 aaKnown RBP17.27■□□□□ 0.36
CLCNKA-203ENST00000439316 CCL15-CCL14A0A0B4J2E2 113 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 LRRIQ4A6NIV6 560 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 K7ERI5 159 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 STAM2O75886 525 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 WFS1O76024 890 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 ANP32DO95626 131 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 EDN1P05305 212 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 ITGAVP06756 1048 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 ATP4AP20648 1035 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 GTF2A2P52657 109 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 CCL15Q16663 113 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 PPP1R15BQ5SWA1 713 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 DNAJC24Q6P3W2 148 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 MCEEQ96PE7 176 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 PAIP2Q9BPZ3 127 aaKnown RBP17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 MYLK2Q9H1R3 596 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 KIF9Q9HAQ2 790 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 ANKFY1Q9P2R3 1169 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 SLC24A2Q9UI40 661 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 GRID1Q9ULK0 1009 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 PHTF1Q9UMS5 762 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 TRPM7Q96QT4 1865 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 F8VP50 259 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 POC1B-GALNT4F8VUJ3 575 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 OATP04181 439 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 CDKN2BP42772 138 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 PDE4CQ08493 712 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 DNAJC3Q13217 504 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 WDR72Q3MJ13 1102 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 TFDP3Q5H9I0 405 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 ZFYVE27Q5T4F4 411 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 TXNRD3NBQ6F5E7 133 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 CENPUQ71F23 418 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 NIPA2Q8N8Q9 360 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 NSMCE1Q8WV22 266 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 SPOCK2Q92563 424 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 SMC6Q96SB8 1091 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 VPS37BQ9H9H4 285 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 DDX56Q9NY93 547 aaKnown RBP17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 STK38LQ9Y2H1 464 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 MAFBQ9Y5Q3 323 aaPredicted RBP17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 USH1CQ9Y6N9 552 aa17.26■□□□□ 0.35
CLCNKA-203ENST00000439316 PDHXO00330 501 aa17.25■□□□□ 0.35
CLCNKA-203ENST00000439316 TYROBPO43914 113 aa17.25■□□□□ 0.35
CLCNKA-203ENST00000439316 EDF1O60869 148 aaKnown RBP17.25■□□□□ 0.35
CLCNKA-203ENST00000439316 ASS1P00966 412 aaKnown RBP17.25■□□□□ 0.35
CLCNKA-203ENST00000439316 KRT15P19012 456 aa17.25■□□□□ 0.35
CLCNKA-203ENST00000439316 GBP2P32456 591 aaPredicted RBP17.25■□□□□ 0.35
CLCNKA-203ENST00000439316 LACTBP83111 547 aaPredicted RBP17.25■□□□□ 0.35
CLCNKA-203ENST00000439316 TAP1Q03518 808 aa17.25■□□□□ 0.35
CLCNKA-203ENST00000439316 GNPTABQ3T906 1256 aa17.25■□□□□ 0.35
CLCNKA-203ENST00000439316 SCARA3Q6AZY7 606 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms