RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 DENND1BQ6P3S1 775 aa12.43□□□□□ -0.42
CD44-209ENST00000433892 TDRPQ86YL5 185 aa12.43□□□□□ -0.42
CD44-209ENST00000433892 LRRC71Q8N4P6 559 aa12.43□□□□□ -0.42
CD44-209ENST00000433892 ANKLE1Q8NAG6 615 aa12.43□□□□□ -0.42
CD44-209ENST00000433892 DENND1AQ8TEH3 1009 aa12.43□□□□□ -0.42
CD44-209ENST00000433892 PRCCQ92733 491 aaPredicted RBP12.43□□□□□ -0.42
CD44-209ENST00000433892 SMC6Q96SB8 1091 aa12.43□□□□□ -0.42
CD44-209ENST00000433892 ACO2Q99798 780 aaKnown RBP12.43□□□□□ -0.42
CD44-209ENST00000433892 ZNF518BQ9C0D4 1074 aa12.43□□□□□ -0.42
CD44-209ENST00000433892 PCDH9Q9HC56 1237 aa12.43□□□□□ -0.42
CD44-209ENST00000433892 DDX56Q9NY93 547 aaKnown RBP12.43□□□□□ -0.42
CD44-209ENST00000433892 NXF1Q9UBU9 619 aaKnown RBP12.43□□□□□ -0.42
CD44-209ENST00000433892 MCM8Q9UJA3 840 aa12.43□□□□□ -0.42
CD44-209ENST00000433892 STK38LQ9Y2H1 464 aa12.43□□□□□ -0.42
CD44-209ENST00000433892 L3MBTL1Q9Y468 752 aa12.43□□□□□ -0.42
CD44-209ENST00000433892 LCTP09848 1927 aa12.43□□□□□ -0.42
CD44-209ENST00000433892 SIP14410 1827 aa12.43□□□□□ -0.42
CD44-209ENST00000433892 A0A1W2PPM1 405 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 C3orf70A6NLC5 250 aaPredicted RBP12.42□□□□□ -0.42
CD44-209ENST00000433892 A8MUI8 341 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 OGTO15294 1046 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 PRPF4O43172 522 aaKnown RBP eCLIP12.42□□□□□ -0.42
CD44-209ENST00000433892 CA4P22748 312 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 EIF4BP23588 611 aaKnown RBP12.42□□□□□ -0.42
CD44-209ENST00000433892 IL1R2P27930 398 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 ASPAP45381 313 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 EFNA5P52803 228 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 GDF10P55107 478 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 RIPK1Q13546 671 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 HIF1AQ16665 826 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 PTPN20Q4JDL3 420 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 RNF43Q68DV7 783 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 CDR2LQ86X02 465 aaPredicted RBP12.42□□□□□ -0.42
CD44-209ENST00000433892 THNSL1Q8IYQ7 743 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 ARFGAP1Q8N6T3 406 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 NIPA2Q8N8Q9 360 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 RNF149Q8NC42 400 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 JOSD2Q8TAC2 188 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 SLC35B2Q8TB61 432 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 ACTL9Q8TC94 416 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 GRAMD1AQ96CP6 724 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 KLRG1Q96E93 195 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 UBN1Q9NPG3 1134 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 ARHGEF3Q9NR81 526 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 PHTF1Q9UMS5 762 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 SHOC2Q9UQ13 582 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 AFG3L2Q9Y4W6 797 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 CEP83Q9Y592 693 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 ITGBL1O95965 494 aaPredicted RBP12.42□□□□□ -0.42
CD44-209ENST00000433892 PRKCBP05771 671 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 KRT3P12035 628 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 CD19P15391 556 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 PTPN7P35236 360 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 RAP1GAPP47736 663 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 CTCFP49711 727 aaPredicted RBP12.42□□□□□ -0.42
CD44-209ENST00000433892 HIRAP54198 1017 aaPredicted RBP12.42□□□□□ -0.42
CD44-209ENST00000433892 GPX6P59796 221 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 LACTBP83111 547 aaPredicted RBP12.42□□□□□ -0.42
CD44-209ENST00000433892 OTUD4Q01804 1114 aaKnown RBP12.42□□□□□ -0.42
CD44-209ENST00000433892 TAP1Q03518 808 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 LAMTOR4Q0VGL1 99 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 ORC1Q13415 861 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 SPARCL1Q14515 664 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 LY6KQ17RY6 165 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 ACCSLQ4AC99 568 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 ANKRD22Q5VYY1 191 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 ASRGL1Q7L266 308 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 TRIM50Q86XT4 487 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 KIAA0319LQ8IZA0 1049 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 MYCBPQ99417 103 aaPredicted RBP12.42□□□□□ -0.42
CD44-209ENST00000433892 XYLT2Q9H1B5 865 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 CYTH4Q9UIA0 394 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 CPSF3Q9UKF6 684 aaKnown RBP12.42□□□□□ -0.42
CD44-209ENST00000433892 PCDHGC3Q9UN70 934 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 POLIQ9UNA4 740 aa12.42□□□□□ -0.42
CD44-209ENST00000433892 CST8O60676 142 aa12.41□□□□□ -0.42
CD44-209ENST00000433892 LRCH4O75427 683 aa12.41□□□□□ -0.42
CD44-209ENST00000433892 CD48P09326 243 aa12.41□□□□□ -0.42
CD44-209ENST00000433892 SSTR1P30872 391 aa12.41□□□□□ -0.42
CD44-209ENST00000433892 CDH5P33151 784 aaPredicted RBP12.41□□□□□ -0.42
CD44-209ENST00000433892 SLC25A11Q02978 314 aaKnown RBP12.41□□□□□ -0.42
CD44-209ENST00000433892 GRM1Q13255 1194 aa12.41□□□□□ -0.42
CD44-209ENST00000433892 ACVR2BQ13705 512 aa12.41□□□□□ -0.42
CD44-209ENST00000433892 EFTUD2Q15029 972 aaKnown RBP eCLIP12.41□□□□□ -0.42
CD44-209ENST00000433892 SLC1A5Q15758 541 aa12.41□□□□□ -0.42
CD44-209ENST00000433892 MAPK6Q16659 721 aa12.41□□□□□ -0.42
CD44-209ENST00000433892 MSS51Q4VC12 460 aa12.41□□□□□ -0.42
CD44-209ENST00000433892 FNBP1LQ5T0N5 605 aa12.41□□□□□ -0.42
CD44-209ENST00000433892 FAM160B1Q5W0V3 765 aa12.41□□□□□ -0.42
CD44-209ENST00000433892 DHX37Q8IY37 1157 aaKnown RBP12.41□□□□□ -0.42
CD44-209ENST00000433892 TMEM130Q8N3G9 435 aa12.41□□□□□ -0.42
CD44-209ENST00000433892 EMC1Q8N766 993 aa12.41□□□□□ -0.42
CD44-209ENST00000433892 CEP120Q8N960 986 aa12.41□□□□□ -0.42
CD44-209ENST00000433892 CHST13Q8NET6 341 aa12.41□□□□□ -0.42
CD44-209ENST00000433892 GIMAP7Q8NHV1 300 aa12.41□□□□□ -0.42
CD44-209ENST00000433892 AGAP11Q8TF27 550 aa12.41□□□□□ -0.42
CD44-209ENST00000433892 STAMBPL1Q96FJ0 436 aa12.41□□□□□ -0.42
CD44-209ENST00000433892 MAK16Q9BXY0 300 aaKnown RBP12.41□□□□□ -0.42
CD44-209ENST00000433892 PPP1R1BQ9UD71 204 aaPredicted RBP12.41□□□□□ -0.42
CD44-209ENST00000433892 STARD13Q9Y3M8 1113 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms