RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 SLC27A1Q6PCB7 646 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 MFSD7Q6UXD7 560 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 TLK2Q86UE8 772 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 XYLT1Q86Y38 959 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 FNIP1Q8TF40 1166 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 PPP1R13LQ8WUF5 828 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 SEMA4AQ9H3S1 761 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 LRRC4CQ9HCJ2 640 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 WDR35Q9P2L0 1181 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 ASIC3Q9UHC3 531 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 KRT1P04264 644 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 ERBB2P04626 1255 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 RARGP13631 454 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 GPD2P43304 727 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 COPS2P61201 443 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 GNGT1P63211 74 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 RHBDF2Q6PJF5 856 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 CATSPER4Q7RTX7 472 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 JOSD2Q8TAC2 188 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 LENG1Q96BZ8 264 aaPredicted RBP21.24■□□□□ 0.99
USP39-204ENST00000409766 SNF8Q96H20 258 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 CCDC114Q96M63 670 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 HEXIM2Q96MH2 286 aaKnown RBP21.24■□□□□ 0.99
USP39-204ENST00000409766 SNTG2Q9NY99 539 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 DERAQ9Y315 318 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 SCN1AP35498 2009 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 SHBGP04278 402 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 CYP2C9P11712 490 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 KRT10P13645 584 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 PTPN7P35236 360 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 GABRB2P47870 512 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 NDST1P52848 882 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 IRX5P78411 483 aaPredicted RBP21.24■□□□□ 0.99
USP39-204ENST00000409766 ADAM17P78536 824 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 IFFO1Q0D2I5 559 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 HIC1Q14526 733 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 ZNF268Q14587 947 aaPredicted RBP21.24■□□□□ 0.99
USP39-204ENST00000409766 MFSD10Q14728 455 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 DENND2CQ68D51 928 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 APBB1IPQ7Z5R6 666 aaPredicted RBP21.24■□□□□ 0.99
USP39-204ENST00000409766 TTC39CQ8N584 583 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 ZMAT2Q96NC0 199 aaKnown RBP21.24■□□□□ 0.99
USP39-204ENST00000409766 OSMRQ99650 979 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 FAM118BQ9BPY3 351 aa21.24■□□□□ 0.99
USP39-204ENST00000409766 EIF2AQ9BY44 585 aaKnown RBP21.24■□□□□ 0.99
USP39-204ENST00000409766 DDX56Q9NY93 547 aaKnown RBP21.24■□□□□ 0.99
USP39-204ENST00000409766 EIF3HO15372 352 aaKnown RBP eCLIP21.23■□□□□ 0.99
USP39-204ENST00000409766 IVLP07476 585 aa21.23■□□□□ 0.99
USP39-204ENST00000409766 DARSP14868 501 aaKnown RBP21.23■□□□□ 0.99
USP39-204ENST00000409766 SLC29A2Q14542 456 aa21.23■□□□□ 0.99
USP39-204ENST00000409766 PCBP1Q15365 356 aaKnown RBP eCLIP21.23■□□□□ 0.99
USP39-204ENST00000409766 KRT71Q3SY84 523 aa21.23■□□□□ 0.99
USP39-204ENST00000409766 ZFYVE27Q5T4F4 411 aa21.23■□□□□ 0.99
USP39-204ENST00000409766 TTC19Q6DKK2 380 aaPredicted RBP21.23■□□□□ 0.99
USP39-204ENST00000409766 SPOCD1Q6ZMY3 1216 aa21.23■□□□□ 0.99
USP39-204ENST00000409766 POLNQ7Z5Q5 900 aa21.23■□□□□ 0.99
USP39-204ENST00000409766 ARFGAP1Q8N6T3 406 aa21.23■□□□□ 0.99
USP39-204ENST00000409766 RAPGEF5Q92565 580 aa21.23■□□□□ 0.99
USP39-204ENST00000409766 USP6NLQ92738 828 aa21.23■□□□□ 0.99
USP39-204ENST00000409766 SNX27Q96L92 541 aa21.23■□□□□ 0.99
USP39-204ENST00000409766 M0QYV0 167 aa21.22■□□□□ 0.99
USP39-204ENST00000409766 TJP3O95049 919 aa21.22■□□□□ 0.99
USP39-204ENST00000409766 PSMA2P25787 234 aa21.22■□□□□ 0.99
USP39-204ENST00000409766 MYO1EQ12965 1108 aa21.22■□□□□ 0.99
USP39-204ENST00000409766 PDCLQ13371 301 aa21.22■□□□□ 0.99
USP39-204ENST00000409766 ZBTB6Q15916 424 aa21.22■□□□□ 0.99
USP39-204ENST00000409766 CCL14Q16627 93 aa21.22■□□□□ 0.99
USP39-204ENST00000409766 NOTUMQ6P988 496 aa21.22■□□□□ 0.99
USP39-204ENST00000409766 MCRS1Q96EZ8 462 aa21.22■□□□□ 0.99
USP39-204ENST00000409766 SYNCQ9H7C4 482 aa21.22■□□□□ 0.99
USP39-204ENST00000409766 AAASQ9NRG9 546 aa21.22■□□□□ 0.99
USP39-204ENST00000409766 CALCOCO1Q9P1Z2 691 aa21.22■□□□□ 0.99
USP39-204ENST00000409766 KIAA1257Q9ULG3 409 aa21.22■□□□□ 0.99
USP39-204ENST00000409766 HAS3O00219 553 aa21.22■□□□□ 0.99
USP39-204ENST00000409766 ATF7P17544 494 aaPredicted RBP21.22■□□□□ 0.99
USP39-204ENST00000409766 SLC25A11Q02978 314 aaKnown RBP21.22■□□□□ 0.99
USP39-204ENST00000409766 TAF1CQ15572 869 aaPredicted RBP21.22■□□□□ 0.99
USP39-204ENST00000409766 TRIP13Q15645 432 aaPredicted RBP21.22■□□□□ 0.99
USP39-204ENST00000409766 TFDP3Q5H9I0 405 aa21.22■□□□□ 0.99
USP39-204ENST00000409766 UBAP2Q5T6F2 1119 aaKnown RBP21.22■□□□□ 0.99
USP39-204ENST00000409766 KAZNQ674X7 775 aa21.22■□□□□ 0.99
USP39-204ENST00000409766 RASAL3Q86YV0 1011 aa21.22■□□□□ 0.99
USP39-204ENST00000409766 TRIP12Q14669 1992 aaPredicted RBP21.22■□□□□ 0.99
USP39-204ENST00000409766 hCG_1818297A0A087WSY0 165 aa21.21■□□□□ 0.99
USP39-204ENST00000409766 RIPK2O43353 540 aa21.21■□□□□ 0.99
USP39-204ENST00000409766 LIASO43766 372 aa21.21■□□□□ 0.99
USP39-204ENST00000409766 LRCH4O75427 683 aa21.21■□□□□ 0.99
USP39-204ENST00000409766 CDKN2BP42772 138 aa21.21■□□□□ 0.99
USP39-204ENST00000409766 DRICH1Q6PGQ1 229 aaPredicted RBP21.21■□□□□ 0.99
USP39-204ENST00000409766 LCLAT1Q6UWP7 414 aa21.21■□□□□ 0.99
USP39-204ENST00000409766 ACSF2Q96CM8 615 aaPredicted RBP21.21■□□□□ 0.99
USP39-204ENST00000409766 NT5C1AQ9BXI3 368 aa21.21■□□□□ 0.99
USP39-204ENST00000409766 METTL5Q9NRN9 209 aaKnown RBP21.21■□□□□ 0.99
USP39-204ENST00000409766 BCCIPQ9P287 314 aaKnown RBP eCLIP21.21■□□□□ 0.99
USP39-204ENST00000409766 HES2Q9Y543 173 aa21.21■□□□□ 0.99
USP39-204ENST00000409766 TRPM7Q96QT4 1865 aa21.21■□□□□ 0.99
USP39-204ENST00000409766 ATF2P15336 505 aa21.21■□□□□ 0.99
USP39-204ENST00000409766 CYP3A5P20815 502 aa21.21■□□□□ 0.99
USP39-204ENST00000409766 ADCY8P40145 1251 aa21.21■□□□□ 0.99
USP39-204ENST00000409766 PSEN2P49810 448 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms