RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 SPPL2BQ8TCT7 592 aa14.28□□□□□ -0.12
VPS28-202ENST00000377348 KHSRPQ92945 711 aaKnown RBP eCLIP14.28□□□□□ -0.12
VPS28-202ENST00000377348 MYLPFQ96A32 169 aa14.28□□□□□ -0.12
VPS28-202ENST00000377348 MYADMQ96S97 322 aa14.28□□□□□ -0.12
VPS28-202ENST00000377348 CORO1BQ9BR76 489 aa14.28□□□□□ -0.12
VPS28-202ENST00000377348 DACH1Q9UI36 760 aa14.28□□□□□ -0.12
VPS28-202ENST00000377348 PCDHB5Q9Y5E4 795 aa14.28□□□□□ -0.12
VPS28-202ENST00000377348 DENND4AQ7Z401 1863 aa14.27□□□□□ -0.12
VPS28-202ENST00000377348 NRG2O14511 850 aaPredicted RBP14.27□□□□□ -0.13
VPS28-202ENST00000377348 GNA14O95837 355 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 RHOP08100 348 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 FAM163BP0C2L3 166 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 CCDC192P0DO97 292 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 HAPLN1P10915 354 aaPredicted RBP14.27□□□□□ -0.13
VPS28-202ENST00000377348 P4HA1P13674 534 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 ATF6P18850 670 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 FSHRP23945 695 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 CYP2F1P24903 491 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 ERCC5P28715 1186 aaPredicted RBP14.27□□□□□ -0.13
VPS28-202ENST00000377348 ALDH1A3P47895 512 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 SMARCB1Q12824 385 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 LRMPQ12912 555 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 NFE2Q16621 373 aaPredicted RBP14.27□□□□□ -0.13
VPS28-202ENST00000377348 TPD52L1Q16890 204 aaPredicted RBP14.27□□□□□ -0.13
VPS28-202ENST00000377348 SLC5A9Q2M3M2 681 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 PABPC1LQ4VXU2 614 aaKnown RBP14.27□□□□□ -0.13
VPS28-202ENST00000377348 HSP90AA4PQ58FG1 418 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 MDH1BQ5I0G3 518 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 SDHAF4Q5VUM1 108 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 SASS6Q6UVJ0 657 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 C11orf57Q6ZUT1 292 aaPredicted RBP14.27□□□□□ -0.13
VPS28-202ENST00000377348 SPATA2LQ8IUW3 424 aaPredicted RBP14.27□□□□□ -0.13
VPS28-202ENST00000377348 ELMOD1Q8N336 334 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 TDRD5Q8NAT2 981 aaKnown RBP14.27□□□□□ -0.13
VPS28-202ENST00000377348 CCDC150Q8NCX0 1101 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 ST13P5Q8NFI4 369 aaPredicted RBP14.27□□□□□ -0.13
VPS28-202ENST00000377348 GPR152Q8TDT2 470 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 GIPC2Q8TF65 315 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 C2orf15Q8WU43 125 aaKnown RBP14.27□□□□□ -0.13
VPS28-202ENST00000377348 TATDN2Q93075 761 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 ZNF512Q96ME7 567 aaPredicted RBP14.27□□□□□ -0.13
VPS28-202ENST00000377348 BCO2Q9BYV7 579 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 NIF3L1Q9GZT8 377 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 COQ4Q9Y3A0 265 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 NR2E1Q9Y466 385 aa14.27□□□□□ -0.13
VPS28-202ENST00000377348 TNFRSF10AO00220 468 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 PTPN2P17706 415 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 PTPN1P18031 435 aaKnown RBP14.26□□□□□ -0.13
VPS28-202ENST00000377348 CD58P19256 250 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 GBP2P32456 591 aaPredicted RBP14.26□□□□□ -0.13
VPS28-202ENST00000377348 CCR2P41597 374 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 TUFMP49411 452 aaKnown RBP14.26□□□□□ -0.13
VPS28-202ENST00000377348 NDST1P52848 882 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 EPHB3P54753 998 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 CYP27A1Q02318 531 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 KCNH2Q12809 1159 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 PLD1Q13393 1074 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 WDR44Q5JSH3 913 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 IQCEQ6IPM2 695 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 OTOP3Q7RTS5 596 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 RNF135Q8IUD6 432 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 MYCBPAPQ8TBZ2 947 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 ING5Q8WYH8 240 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 TCEAL4Q96EI5 215 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 PCED1BQ96HM7 432 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 TWNKQ96RR1 684 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 ARID3AQ99856 593 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 HSFX1Q9UBD0 423 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 USTQ9Y2C2 406 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.26□□□□□ -0.13
VPS28-202ENST00000377348 TRIOO75962 3097 aa14.26□□□□□ -0.13
VPS28-202ENST00000377348 NOTCH4Q99466 2003 aa14.25□□□□□ -0.13
VPS28-202ENST00000377348 CLDN5O00501 218 aa14.25□□□□□ -0.13
VPS28-202ENST00000377348 AFPP02771 609 aaKnown RBP14.25□□□□□ -0.13
VPS28-202ENST00000377348 MYL4P12829 197 aa14.25□□□□□ -0.13
VPS28-202ENST00000377348 GJA1P17302 382 aa14.25□□□□□ -0.13
VPS28-202ENST00000377348 BDNFP23560 247 aa14.25□□□□□ -0.13
VPS28-202ENST00000377348 STX1AQ16623 288 aa14.25□□□□□ -0.13
VPS28-202ENST00000377348 DDR2Q16832 855 aa14.25□□□□□ -0.13
VPS28-202ENST00000377348 PRSS36Q5K4E3 855 aa14.25□□□□□ -0.13
VPS28-202ENST00000377348 POTEHQ6S545 545 aa14.25□□□□□ -0.13
VPS28-202ENST00000377348 ACOT1Q86TX2 421 aa14.25□□□□□ -0.13
VPS28-202ENST00000377348 TMC8Q8IU68 726 aa14.25□□□□□ -0.13
VPS28-202ENST00000377348 SCN4BQ8IWT1 228 aa14.25□□□□□ -0.13
VPS28-202ENST00000377348 B3GALNT2Q8NCR0 500 aa14.25□□□□□ -0.13
VPS28-202ENST00000377348 FAM200AQ8TCP9 573 aa14.25□□□□□ -0.13
VPS28-202ENST00000377348 THAP9Q9H5L6 903 aa14.25□□□□□ -0.13
VPS28-202ENST00000377348 ZNF334Q9HCZ1 680 aaPredicted RBP14.25□□□□□ -0.13
VPS28-202ENST00000377348 SAMSN1Q9NSI8 373 aaKnown RBP14.25□□□□□ -0.13
VPS28-202ENST00000377348 ANO10Q9NW15 660 aa14.25□□□□□ -0.13
VPS28-202ENST00000377348 MAGEC2Q9UBF1 373 aaPredicted RBP14.25□□□□□ -0.13
VPS28-202ENST00000377348 LIMD1Q9UGP4 676 aa14.25□□□□□ -0.13
VPS28-202ENST00000377348 MUTYHQ9UIF7 546 aa14.25□□□□□ -0.13
VPS28-202ENST00000377348 MRPS23Q9Y3D9 190 aaKnown RBP14.25□□□□□ -0.13
VPS28-202ENST00000377348 ASGR2P07307 311 aa14.24□□□□□ -0.13
VPS28-202ENST00000377348 CEBPBP17676 345 aa14.24□□□□□ -0.13
VPS28-202ENST00000377348 INCA1Q0VD86 236 aa14.24□□□□□ -0.13
VPS28-202ENST00000377348 MTMR3Q13615 1198 aa14.24□□□□□ -0.13
VPS28-202ENST00000377348 KLHL40Q2TBA0 621 aa14.24□□□□□ -0.13
VPS28-202ENST00000377348 CFAP221Q4G0U5 840 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms