RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 ZC2HC1CQ53FD0 456 aaPredicted RBP16.72■□□□□ 0.27
HMGA1-202ENST00000347617 GPAT2Q6NUI2 795 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 ZNF449Q6P9G9 518 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 LRRC74BQ6ZQY2 392 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 CLNKQ7Z7G1 428 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 STMN2Q93045 179 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 RBM15Q96T37 977 aaKnown RBP eCLIP16.72■□□□□ 0.27
HMGA1-202ENST00000347617 DMAP1Q9NPF5 467 aaPredicted RBP16.72■□□□□ 0.27
HMGA1-202ENST00000347617 DNAJB4Q9UDY4 337 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 CNMDO75829 334 aa16.71■□□□□ 0.27
HMGA1-202ENST00000347617 PSMG1O95456 288 aa16.71■□□□□ 0.27
HMGA1-202ENST00000347617 RFC5P40937 340 aa16.71■□□□□ 0.27
HMGA1-202ENST00000347617 SNX1Q13596 522 aa16.71■□□□□ 0.27
HMGA1-202ENST00000347617 PPP1R15BQ5SWA1 713 aa16.71■□□□□ 0.27
HMGA1-202ENST00000347617 MOB2Q70IA6 237 aa16.71■□□□□ 0.27
HMGA1-202ENST00000347617 SHCBP1Q8NEM2 672 aa16.71■□□□□ 0.27
HMGA1-202ENST00000347617 SCG3Q8WXD2 468 aaKnown RBP16.71■□□□□ 0.27
HMGA1-202ENST00000347617 ITFG2Q969R8 447 aa16.71■□□□□ 0.27
HMGA1-202ENST00000347617 NSL1Q96IY1 281 aa16.71■□□□□ 0.27
HMGA1-202ENST00000347617 GBP5Q96PP8 586 aa16.71■□□□□ 0.27
HMGA1-202ENST00000347617 MPHOSPH6Q99547 160 aaKnown RBP16.71■□□□□ 0.27
HMGA1-202ENST00000347617 KIAA1586Q9HCI6 787 aa16.71■□□□□ 0.27
HMGA1-202ENST00000347617 DDX43Q9NXZ2 648 aaKnown RBP16.71■□□□□ 0.27
HMGA1-202ENST00000347617 PSMC3IPQ9P2W1 217 aaPredicted RBP16.71■□□□□ 0.27
HMGA1-202ENST00000347617 KCNG1Q9UIX4 513 aa16.71■□□□□ 0.27
HMGA1-202ENST00000347617 MTO1Q9Y2Z2 717 aaKnown RBP16.71■□□□□ 0.27
HMGA1-202ENST00000347617 F8W8V4 182 aa16.7■□□□□ 0.26
HMGA1-202ENST00000347617 DDX39AO00148 427 aaKnown RBP16.7■□□□□ 0.26
HMGA1-202ENST00000347617 TM9SF1O15321 606 aa16.7■□□□□ 0.26
HMGA1-202ENST00000347617 ENTPD5O75356 428 aa16.7■□□□□ 0.26
HMGA1-202ENST00000347617 TJP3O95049 919 aa16.7■□□□□ 0.26
HMGA1-202ENST00000347617 TGDSO95455 350 aa16.7■□□□□ 0.26
HMGA1-202ENST00000347617 IL1BP01584 269 aa16.7■□□□□ 0.26
HMGA1-202ENST00000347617 KRT15P19012 456 aa16.7■□□□□ 0.26
HMGA1-202ENST00000347617 CA4P22748 312 aa16.7■□□□□ 0.26
HMGA1-202ENST00000347617 PSMC4P43686 418 aa16.7■□□□□ 0.26
HMGA1-202ENST00000347617 RARRES1P49788 294 aa16.7■□□□□ 0.26
HMGA1-202ENST00000347617 TUBP50607 506 aa16.7■□□□□ 0.26
HMGA1-202ENST00000347617 CTC1Q2NKJ3 1217 aa16.7■□□□□ 0.26
HMGA1-202ENST00000347617 ODR4Q5SWX8 454 aa16.7■□□□□ 0.26
HMGA1-202ENST00000347617 PPP1R2P3Q6NXS1 205 aa16.7■□□□□ 0.26
HMGA1-202ENST00000347617 OTOAQ7RTW8 1153 aa16.7■□□□□ 0.26
HMGA1-202ENST00000347617 DHX37Q8IY37 1157 aaKnown RBP16.7■□□□□ 0.26
HMGA1-202ENST00000347617 ZNF75CPQ92670 426 aaPredicted RBP16.7■□□□□ 0.26
HMGA1-202ENST00000347617 GATA6Q92908 595 aa16.7■□□□□ 0.26
HMGA1-202ENST00000347617 ACCSQ96QU6 501 aa16.7■□□□□ 0.26
HMGA1-202ENST00000347617 CADM1Q9BY67 442 aaKnown RBP16.7■□□□□ 0.26
HMGA1-202ENST00000347617 MROH8Q9H579 483 aa16.7■□□□□ 0.26
HMGA1-202ENST00000347617 H0Y3Z8 333 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 HGSO14964 777 aaPredicted RBP16.69■□□□□ 0.26
HMGA1-202ENST00000347617 TYROBPO43914 113 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 RNF8O76064 485 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 CCNE2O96020 404 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 TGFB3P10600 412 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 MXI1P50539 228 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 CACNA2D1P54289 1103 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 KLF1Q13351 362 aaPredicted RBP16.69■□□□□ 0.26
HMGA1-202ENST00000347617 LAMB3Q13751 1172 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 RCN1Q15293 331 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 DRICH1Q6PGQ1 229 aaPredicted RBP16.69■□□□□ 0.26
HMGA1-202ENST00000347617 PADI6Q6TGC4 694 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 ENOSF1Q7L5Y1 443 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 ARHGAP22Q7Z5H3 698 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 PTPRN2Q92932 1015 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 PTCD3Q96EY7 689 aaKnown RBP16.69■□□□□ 0.26
HMGA1-202ENST00000347617 VPS11Q9H270 941 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 RBPJLQ9UBG7 517 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 DNALI1O14645 258 aaPredicted RBP16.69■□□□□ 0.26
HMGA1-202ENST00000347617 ZBTB39O15060 712 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 GSC2O15499 205 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 CBX6O95503 412 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 PSAPP07602 524 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 RRM1P23921 792 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 KLRC2P26717 231 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 YWHABP31946 246 aaKnown RBP16.69■□□□□ 0.26
HMGA1-202ENST00000347617 ENPEPQ07075 957 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 CCDC142Q17RM4 750 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 CLEC16AQ2KHT3 1053 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 KHDC1Q4VXA5 237 aaKnown RBP16.69■□□□□ 0.26
HMGA1-202ENST00000347617 ZNF677Q86XU0 584 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 KATNAL2Q8IYT4 538 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 NCSTNQ92542 709 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 ATP6V0A1Q93050 837 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 MCUR1Q96AQ8 359 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 C9orf72Q96LT7 481 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 TRIM55Q9BYV6 548 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 ST6GALNAC4Q9H4F1 302 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 SLC9A2Q9UBY0 812 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 CLEC11AQ9Y240 323 aa16.69■□□□□ 0.26
HMGA1-202ENST00000347617 SFI1A8K8P3 1242 aa16.68■□□□□ 0.26
HMGA1-202ENST00000347617 GYG2O15488 501 aa16.68■□□□□ 0.26
HMGA1-202ENST00000347617 SPAG7O75391 227 aa16.68■□□□□ 0.26
HMGA1-202ENST00000347617 ATG7O95352 703 aa16.68■□□□□ 0.26
HMGA1-202ENST00000347617 CYP11B1P15538 503 aa16.68■□□□□ 0.26
HMGA1-202ENST00000347617 GCAP28676 217 aa16.68■□□□□ 0.26
HMGA1-202ENST00000347617 MORF4L2Q15014 288 aa16.68■□□□□ 0.26
HMGA1-202ENST00000347617 SEPT7Q16181 437 aaKnown RBP16.68■□□□□ 0.26
HMGA1-202ENST00000347617 CCDC62Q6P9F0 684 aa16.68■□□□□ 0.26
HMGA1-202ENST00000347617 MAEAQ7L5Y9 396 aa16.68■□□□□ 0.26
HMGA1-202ENST00000347617 NCAPG2Q86XI2 1143 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms