RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TSEN34Q9BSV6 310 aaKnown RBP13.13□□□□□ -0.31
SDC3-201ENST00000336798 RANBP17Q9H2T7 1088 aaKnown RBP13.13□□□□□ -0.31
SDC3-201ENST00000336798 CD248Q9HCU0 757 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 CFAP99D6REC4 459 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 MBL2P11226 248 aaPredicted RBP13.13□□□□□ -0.31
SDC3-201ENST00000336798 ITGA8P53708 1063 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 CDC42EP5Q6NZY7 148 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 CPB2Q96IY4 423 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 BPIFA3Q9BQP9 254 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 MTMR4Q9NYA4 1195 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 TMA7Q9Y2S6 64 aaKnown RBP13.13□□□□□ -0.31
SDC3-201ENST00000336798 ARL2BPQ9Y2Y0 163 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 GCC2Q8IWJ2 1684 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 M0QYT0 321 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 CYP7B1O75881 506 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 GPC1P35052 558 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 SERPINB4P48594 390 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 TRIP10Q15642 601 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 DGKDQ16760 1214 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 ZNF473Q8WTR7 871 aaKnown RBP13.13□□□□□ -0.31
SDC3-201ENST00000336798 RIN2Q8WYP3 895 aaPredicted RBP13.13□□□□□ -0.31
SDC3-201ENST00000336798 ERP27Q96DN0 273 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 CNDP1Q96KN2 507 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 ECSITQ9BQ95 431 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 PRR12Q9ULL5 1215 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 PITPNM2Q9BZ72 1349 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 CPSF4O95639 269 aaKnown RBP13.13□□□□□ -0.31
SDC3-201ENST00000336798 EPHB2P29323 1055 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 FOXO4P98177 505 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 PLCL1Q15111 1095 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 BNIPLQ7Z465 357 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 SCFD2Q8WU76 684 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 OSGEPL1Q9H4B0 414 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 CNGB3Q9NQW8 809 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 RNF112Q9ULX5 631 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 NEO1Q92859 1461 aa13.13□□□□□ -0.31
SDC3-201ENST00000336798 MYMKA6NI61 221 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 P4HA2O15460 535 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 UCHL3P15374 230 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 SPRP35270 261 aaPredicted RBP13.12□□□□□ -0.31
SDC3-201ENST00000336798 RAP1GAPP47736 663 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 P3H2Q8IVL5 708 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 RPRD1AQ96P16 312 aaPredicted RBP13.12□□□□□ -0.31
SDC3-201ENST00000336798 H2AFYO75367 372 aaKnown RBP13.12□□□□□ -0.31
SDC3-201ENST00000336798 SMNDC1O75940 238 aaKnown RBP eCLIP13.12□□□□□ -0.31
SDC3-201ENST00000336798 TCF7P36402 384 aaPredicted RBP13.12□□□□□ -0.31
SDC3-201ENST00000336798 SERPINB5P36952 375 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 PTGER2P43116 358 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 GLRBP48167 497 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 NPEPPSP55786 919 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 OVGP1Q12889 678 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 PCYOX1LQ8NBM8 494 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 ASZ1Q8WWH4 475 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 NSUN4Q96CB9 384 aaKnown RBP13.12□□□□□ -0.31
SDC3-201ENST00000336798 WDCPQ9H6R7 721 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 BATF3Q9NR55 127 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 PBRM1Q86U86 1689 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.12□□□□□ -0.31
SDC3-201ENST00000336798 EVPLLA8MZ36 301 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 B2RBV5 119 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 SLC16A3O15427 465 aaKnown RBP13.12□□□□□ -0.31
SDC3-201ENST00000336798 ZNF177Q13360 481 aaPredicted RBP13.12□□□□□ -0.31
SDC3-201ENST00000336798 CACUL1Q86Y37 369 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 PHACTR4Q8IZ21 702 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 CATSPER1Q8NEC5 780 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 SLITRK1Q96PX8 696 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 SH3GL2Q99962 352 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 CYP4F12Q9HCS2 524 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 SLC38A7Q9NVC3 462 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 FAM200BP0CF97 657 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 POU1F1P28069 291 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 ZNF543Q08ER8 600 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 PDK1Q15118 436 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 KYNUQ16719 465 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 UGP2Q16851 508 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 TMEM154Q6P9G4 183 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 RD3Q7Z3Z2 195 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 GRAMD1AQ96CP6 724 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 PTPRHQ9HD43 1115 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 RGS5O15539 181 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 MAP3K13O43283 966 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 HNRNPH1P31943 449 aaKnown RBP13.12□□□□□ -0.31
SDC3-201ENST00000336798 MDH1P40925 334 aaKnown RBP13.12□□□□□ -0.31
SDC3-201ENST00000336798 MAGEA4P43358 317 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 NFKBIZQ9BYH8 718 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 TRIM9Q9C026 710 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 SCUBE2Q9NQ36 999 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 TRMT6Q9UJA5 497 aaKnown RBP13.12□□□□□ -0.31
SDC3-201ENST00000336798 SNX12Q9UMY4 172 aa13.12□□□□□ -0.31
SDC3-201ENST00000336798 C16orf96A6NNT2 1141 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 STX7O15400 261 aaKnown RBP13.11□□□□□ -0.31
SDC3-201ENST00000336798 ZC3H11AO75152 810 aaKnown RBP eCLIP13.11□□□□□ -0.31
SDC3-201ENST00000336798 KCNA3P22001 575 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 COQ7Q99807 217 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 SPON1Q9HCB6 807 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 RBM12Q9NTZ6 932 aaKnown RBP13.11□□□□□ -0.31
SDC3-201ENST00000336798 KIF21AQ7Z4S6 1674 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 CFAP73A6NFT4 308 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 VWA5AO00534 786 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 ATP6V1B1P15313 513 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms