RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 RGS7P49802 495 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 SMAD1Q15797 465 aaKnown RBP15.42■□□□□ 0.06
TCOF1-201ENST00000323668 DALRD3Q5D0E6 543 aaKnown RBP15.42■□□□□ 0.06
TCOF1-201ENST00000323668 DACT2Q5SW24 774 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 ACAD11Q709F0 780 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 ANO5Q75V66 913 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 ZCCHC9Q8N567 271 aaKnown RBP15.42■□□□□ 0.06
TCOF1-201ENST00000323668 SH3GL3Q99963 347 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 ZNF408Q9H9D4 720 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 SYNPO2Q9UMS6 1093 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 NR2E1Q9Y466 385 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 LSM8O95777 96 aaKnown RBP15.42■□□□□ 0.06
TCOF1-201ENST00000323668 SERPINB4P48594 390 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 KCNJ2P63252 427 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 XRCC4Q13426 336 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 LRRC15Q8TF66 581 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 OSBPL7Q9BZF2 842 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 CCNA1P78396 465 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 AP1B1Q10567 949 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 ARL13BQ3SXY8 428 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 KRT80Q6KB66 452 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 AGAP11Q8TF27 550 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 SPATA33Q96N06 139 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 ANKRD27Q96NW4 1050 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 MRIQ9BWK5 157 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 OGTO15294 1046 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 ADRB2P07550 413 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 CHI3L2Q15782 390 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 NFIL3Q16649 462 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 IER5Q5VY09 327 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 MTMR12Q9C0I1 747 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.41■□□□□ 0.06
TCOF1-201ENST00000323668 PIM2Q9P1W9 311 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 ACTL7BQ9Y614 415 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 TM9SF1O15321 606 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 CREB3O43889 395 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 STILQ15468 1287 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 PTF1AQ7RTS3 328 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 PID1Q7Z2X4 250 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 KATNAL2Q8IYT4 538 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 DONSONQ9NYP3 566 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 FAF1Q9UNN5 650 aaPredicted RBP15.41■□□□□ 0.06
TCOF1-201ENST00000323668 GPD1P21695 349 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 DEUP1Q05D60 604 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 PPATQ06203 517 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 BOLA3Q53S33 107 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 RNF169Q8NCN4 708 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 HDAC11Q96DB2 347 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 KIF12Q96FN5 646 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 FAM49AQ9H0Q0 323 aaPredicted RBP15.41■□□□□ 0.06
TCOF1-201ENST00000323668 PXMP2Q9NR77 195 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 CISHQ9NSE2 258 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 IPO11Q9UI26 975 aaKnown RBP15.41■□□□□ 0.06
TCOF1-201ENST00000323668 GRID1Q9ULK0 1009 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 A8MXQ7 604 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 ACADSP16219 412 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 MROH9Q5TGP6 573 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 DPP9Q86TI2 863 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 PALB2Q86YC2 1186 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 ICA1LQ8NDH6 482 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 MCUQ8NE86 351 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 OLFM3Q96PB7 478 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 STAP1Q9ULZ2 295 aa15.41■□□□□ 0.06
TCOF1-201ENST00000323668 C19orf81C9J6K1 198 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 PFDN1O60925 122 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 KLHL2O95198 593 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 CHKAP35790 457 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 RBP5P82980 135 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 CUL3Q13618 768 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 PGM5Q15124 567 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 LRRC23Q53EV4 343 aaPredicted RBP15.4■□□□□ 0.06
TCOF1-201ENST00000323668 LACTB2Q53H82 288 aaPredicted RBP15.4■□□□□ 0.06
TCOF1-201ENST00000323668 ATF7IP2Q5U623 682 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 PRPF39Q86UA1 669 aaKnown RBP15.4■□□□□ 0.06
TCOF1-201ENST00000323668 BEST2Q8NFU1 509 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 PRCCQ92733 491 aaPredicted RBP15.4■□□□□ 0.06
TCOF1-201ENST00000323668 TMEM237Q96Q45 408 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.4■□□□□ 0.06
TCOF1-201ENST00000323668 DNM1LO00429 736 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 MYL2P10916 166 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 SSTR1P30872 391 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 MED21Q13503 144 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 LRRC36Q1X8D7 754 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 MYLK2Q9H1R3 596 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 SLC12A6Q9UHW9 1150 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 COG5Q9UP83 839 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 MYH2Q9UKX2 1941 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 NKRFO15226 690 aaKnown RBP eCLIP15.4■□□□□ 0.06
TCOF1-201ENST00000323668 CALB2P22676 271 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 ESRRGP62508 458 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 DYNC1I2Q13409 638 aaKnown RBP15.4■□□□□ 0.06
TCOF1-201ENST00000323668 TLCD1Q96CP7 247 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 MYL6P60660 151 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 CRY2Q49AN0 593 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 WASHC2DQ5SRD0 308 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 DCLK2Q8N568 766 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 UBA3Q8TBC4 463 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 TCP10LQ8TDR4 215 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 PCDHB18PQ96TA0 734 aa15.4■□□□□ 0.06
TCOF1-201ENST00000323668 UNC5CO95185 931 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms